Wall clock time and date at job start Sun Mar 29 2020 21:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99898 * 2 1 3 5 5 H 1.07995 * 120.00106 * 245.63474 * 4 2 1 6 6 C 1.37877 * 119.99879 * 65.63190 * 4 2 1 7 7 N 1.31510 * 119.99900 * 197.16879 * 6 4 2 8 8 Si 1.86801 * 119.99902 * 17.43785 * 6 4 2 9 9 H 1.48502 * 109.47020 * 179.72366 * 8 6 4 10 10 H 1.48504 * 109.47454 * 299.72532 * 8 6 4 11 11 H 1.48503 * 109.46823 * 59.72952 * 8 6 4 12 12 N 1.46903 * 109.46997 * 120.00324 * 2 1 3 13 13 C 1.46901 * 110.99948 * 274.99688 * 12 2 1 14 14 C 1.50696 * 109.47487 * 179.97438 * 13 12 2 15 15 N 1.29415 * 125.69515 * 90.02193 * 14 13 12 16 16 N 1.26402 * 116.47634 * 179.97438 * 15 14 13 17 17 C 1.29421 * 116.47236 * 0.02562 * 16 15 14 18 18 S 1.71219 * 108.60801 * 359.77209 * 17 16 15 19 19 H 1.09000 * 109.46859 * 306.33938 * 1 2 3 20 20 H 1.08999 * 109.46843 * 66.33377 * 1 2 3 21 21 H 1.08994 * 109.47090 * 186.33935 * 1 2 3 22 22 H 0.97000 * 119.99990 * 355.18262 * 7 6 4 23 23 H 1.00902 * 110.99920 * 38.94678 * 12 2 1 24 24 H 1.08998 * 109.47327 * 300.00050 * 13 12 2 25 25 H 1.09003 * 109.47160 * 59.99949 * 13 12 2 26 26 H 1.07999 * 125.69462 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5761 -1.6385 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9228 -0.9277 -3.5509 8 14 1.3093 1.6194 -2.6500 9 1 1.1225 1.9472 -4.0863 10 1 0.0393 1.8586 -1.9184 11 1 2.3780 2.4793 -2.0810 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5560 15 7 3.8276 -0.6411 3.9060 16 7 4.0553 -1.3059 4.9566 17 6 3.0228 -1.7940 5.5656 18 16 1.6154 -1.3460 4.6996 19 1 -0.3633 0.6090 0.8278 20 1 -0.3633 0.4125 -0.9412 21 1 -0.3633 -1.0213 0.1135 22 1 2.2474 -1.8381 -3.4692 23 1 1.4495 -1.4980 1.4100 24 1 2.7590 1.0460 2.1183 25 1 1.0871 0.6163 2.5526 26 1 3.0451 -2.3819 6.4713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119879988.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:04 Heat of formation + Delta-G solvation = 40.985006 kcal Electronic energy + Delta-G solvation = -11798.585178 eV Core-core repulsion = 9617.710267 eV Total energy + Delta-G solvation = -2180.874911 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.27868 -38.20839 -34.95930 -33.19818 -30.90889 -28.18222 -26.77957 -25.25826 -21.99380 -21.66565 -20.17719 -19.58519 -17.29686 -16.94859 -16.13884 -15.66572 -15.49297 -15.20947 -14.35581 -14.05024 -13.84927 -13.71524 -13.11758 -12.95225 -12.33995 -11.79680 -11.59595 -11.46034 -11.27292 -11.09594 -11.00640 -10.69228 -10.36637 -9.24143 -8.67762 -6.30627 -0.53491 -0.01861 0.36529 1.47392 1.53799 1.57729 1.74561 2.52234 3.00976 3.11087 3.53465 3.81306 3.96788 4.41029 4.43519 4.53495 4.64206 4.71367 4.75759 5.07182 5.47389 5.79718 6.08669 6.32586 6.55271 6.72811 7.48142 7.55275 8.68103 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060706 B = 0.007027 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.126148 B = 3983.451121 C = 4062.770850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.191 3.809 3 H 0.036 0.964 4 C -0.588 4.588 5 H 0.013 0.987 6 C -0.026 4.026 7 N -0.943 5.943 8 Si 1.086 2.914 9 H -0.292 1.292 10 H -0.233 1.233 11 H -0.268 1.268 12 N -0.685 5.685 13 C 0.135 3.865 14 C -0.021 4.021 15 N -0.295 5.295 16 N -0.304 5.304 17 C -0.044 4.044 18 S 0.241 5.759 19 H 0.063 0.937 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.249 0.751 23 H 0.336 0.664 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 2.233 19.157 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.626 4.626 5 H 0.032 0.968 6 C -0.223 4.223 7 N -0.580 5.580 8 Si 0.907 3.093 9 H -0.219 1.219 10 H -0.157 1.157 11 H -0.193 1.193 12 N -0.317 5.317 13 C 0.002 3.998 14 C -0.301 4.301 15 N -0.133 5.133 16 N -0.140 5.140 17 C -0.343 4.343 18 S 0.483 5.517 19 H 0.082 0.918 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.153 0.847 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.926 3.500 17.906 19.183 hybrid contribution 0.250 -1.781 0.845 1.987 sum -5.676 1.719 18.751 19.667 Atomic orbital electron populations 1.22751 0.98238 1.01023 1.01510 1.19386 0.90965 0.94134 0.87349 0.94625 1.22182 1.38677 1.08819 0.92955 0.96820 1.27250 0.94686 1.08657 0.91706 1.70994 1.44854 1.09482 1.32642 0.83583 0.79021 0.70337 0.76405 1.21885 1.15717 1.19302 1.60499 1.59033 1.09400 1.02775 1.20484 1.00606 0.94068 0.84595 1.29393 0.93008 1.03860 1.03834 1.71406 1.18171 1.14948 1.08782 1.71422 1.29719 1.09638 1.03199 1.31158 0.91203 1.04542 1.07400 1.83344 1.10565 1.42890 1.14919 0.91817 0.92929 0.93522 0.94206 0.84653 0.89123 0.90043 0.72891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.63 8.85 71.98 0.64 -5.99 15 2 C 0.19 8.48 2.16 44.17 0.10 8.57 15 3 H 0.04 1.57 6.45 -2.39 -0.02 1.55 15 4 C -0.59 -33.56 9.10 25.60 0.23 -33.32 15 5 H 0.01 0.88 8.06 -2.91 -0.02 0.86 15 6 C -0.03 -1.50 5.29 84.66 0.45 -1.06 15 7 N -0.94 -59.79 13.70 21.45 0.29 -59.50 15 8 Si 1.09 48.62 26.29 68.60 1.80 50.42 15 9 H -0.29 -13.42 7.11 99.48 0.71 -12.71 15 10 H -0.23 -8.82 5.76 99.48 0.57 -8.25 15 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 12 N -0.69 -27.06 6.22 -499.45 -3.11 -30.17 15 13 C 0.14 4.17 6.08 85.56 0.52 4.69 15 14 C -0.02 -0.62 7.04 88.46 0.62 0.00 15 15 N -0.29 -10.35 11.66 -50.85 -0.59 -10.94 15 16 N -0.30 -9.28 11.66 -60.75 -0.71 -9.99 15 17 C -0.04 -0.87 12.39 130.60 1.62 0.75 15 18 S 0.24 4.49 23.06 -56.49 -1.30 3.18 15 19 H 0.06 1.86 7.62 -2.39 -0.02 1.85 15 20 H 0.05 2.10 4.88 -2.39 -0.01 2.09 15 21 H 0.05 1.73 8.01 -2.39 -0.02 1.71 15 22 H 0.25 16.17 8.73 -92.71 -0.81 15.36 15 23 H 0.34 12.34 8.38 -89.69 -0.75 11.59 15 24 H 0.09 2.98 8.06 -2.39 -0.02 2.96 15 25 H 0.08 1.97 7.56 -2.39 -0.02 1.95 15 26 H 0.26 2.26 8.06 -2.91 -0.02 2.24 15 Total: -1.00 -73.56 239.29 0.84 -72.72 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.28 Total: 10.62 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 4.18 Total: -26.35 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -4.11 Total: -110.60 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.80 Total: 50.42 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.30 Total: 3.18 kcal Total: -73.56 0.84 -72.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879988.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.707 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds