Wall clock time and date at job start Sun Mar 29 2020 21:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86808 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47194 * 274.15441 * 3 2 1 5 5 H 1.48504 * 109.46897 * 34.15147 * 3 2 1 6 6 H 1.48500 * 109.47133 * 154.15363 * 3 2 1 7 7 C 1.38950 * 120.00567 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 341.48650 * 7 2 1 9 9 N 1.37098 * 120.00178 * 161.76992 * 7 2 1 10 10 C 1.34779 * 119.99813 * 315.77453 * 9 7 2 11 11 O 1.21289 * 119.99782 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99940 * 180.02562 * 10 9 7 13 13 H 1.09003 * 115.55012 * 325.58357 * 12 10 9 14 14 C 1.52999 * 117.49929 * 179.91569 * 12 10 9 15 15 C 1.53001 * 117.50053 * 111.25422 * 12 10 9 16 16 H 1.09001 * 117.49493 * 0.02562 * 15 12 10 17 17 F 1.39902 * 117.50135 * 214.98144 * 15 12 10 18 18 C 1.46499 * 120.00171 * 135.77938 * 9 7 2 19 19 C 1.53003 * 117.50023 * 3.28899 * 18 9 7 20 20 C 1.53001 * 117.50023 * 294.62994 * 18 9 7 21 21 H 0.97001 * 120.00716 * 359.97438 * 1 2 3 22 22 H 1.08994 * 117.49792 * 359.97438 * 14 12 10 23 23 H 1.08998 * 117.49968 * 144.99687 * 14 12 10 24 24 H 1.08999 * 115.55227 * 148.95660 * 18 9 7 25 25 H 1.09006 * 117.49768 * 0.02562 * 19 18 9 26 26 H 1.08991 * 117.50049 * 145.02018 * 19 18 9 27 27 H 1.09001 * 117.50250 * 214.98113 * 20 18 9 28 28 H 1.09005 * 117.49589 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4077 2.0973 -1.3964 5 1 1.4920 2.6258 0.7860 6 1 3.5867 1.4166 0.6104 7 6 2.0089 -1.2033 -0.0005 8 1 1.5109 -2.1146 0.2960 9 7 3.3283 -1.2328 -0.3720 10 6 3.7380 -0.5484 -1.4583 11 8 2.9395 0.0941 -2.1070 12 6 5.1881 -0.5813 -1.8670 13 1 5.9062 -0.6326 -1.0485 14 6 5.5900 0.2146 -3.1103 15 6 5.5405 -1.3144 -3.1628 16 1 4.7233 -1.7726 -3.7200 17 9 6.7598 -1.9990 -3.2067 18 6 4.2928 -2.0084 0.4119 19 6 3.7534 -2.8253 1.5878 20 6 4.5651 -1.5537 1.8471 21 1 -0.4851 0.8400 0.0004 22 1 4.8054 0.7617 -3.6330 23 1 6.5723 0.6869 -3.1098 24 1 5.1276 -2.4267 -0.1505 25 1 2.6807 -2.7859 1.7779 26 1 4.2335 -3.7806 1.7992 27 1 5.5790 -1.6731 2.2291 28 1 4.0270 -0.6772 2.2080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121047080.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:25 Heat of formation + Delta-G solvation = -14.561842 kcal Electronic energy + Delta-G solvation = -14562.206982 eV Core-core repulsion = 11916.250546 eV Total energy + Delta-G solvation = -2645.956436 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.46646 -39.32099 -36.75329 -35.12522 -32.90854 -31.45557 -26.02082 -23.04541 -22.16683 -21.84353 -21.21429 -19.06899 -17.68192 -16.42326 -15.86903 -15.35655 -15.22840 -14.48277 -14.08275 -13.49741 -13.37345 -13.20460 -12.55396 -12.23069 -12.04397 -11.47094 -11.15770 -10.73654 -10.41288 -10.24640 -10.22498 -10.05551 -9.80979 -9.63618 -8.64124 -8.62057 -7.53065 -6.26011 -4.04384 3.05277 3.42773 3.47146 3.60467 3.90697 4.20750 4.42315 4.45139 4.71348 4.93399 4.96587 5.19469 5.23577 5.45764 5.51455 5.61632 5.73518 5.86611 6.15515 6.17852 6.29537 6.30683 6.65474 6.83996 7.78216 7.93397 8.70330 8.82932 9.35497 9.73825 10.79429 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.014473 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.784659 B = 1934.143840 C = 2508.753400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.093 3.907 3 Si 0.904 3.096 4 H -0.254 1.254 5 H -0.305 1.305 6 H -0.277 1.277 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.429 5.429 10 C 0.481 3.519 11 O -0.540 6.540 12 C -0.189 4.189 13 H 0.123 0.877 14 C -0.164 4.164 15 C 0.036 3.964 16 H 0.138 0.862 17 F -0.187 7.187 18 C 0.061 3.939 19 C -0.171 4.171 20 C -0.199 4.199 21 H 0.273 0.727 22 H 0.121 0.879 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -2.144 -0.814 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.116 4.116 3 Si 0.734 3.266 4 H -0.180 1.180 5 H -0.234 1.234 6 H -0.203 1.203 7 C -0.474 4.474 8 H 0.116 0.884 9 N -0.148 5.148 10 C 0.270 3.730 11 O -0.422 6.422 12 C -0.211 4.211 13 H 0.141 0.859 14 C -0.202 4.202 15 C -0.001 4.001 16 H 0.155 0.845 17 F -0.168 7.168 18 C -0.044 4.044 19 C -0.209 4.209 20 C -0.238 4.238 21 H 0.083 0.917 22 H 0.139 0.861 23 H 0.124 0.876 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.548 -1.769 -1.139 10.756 hybrid contribution 0.575 0.737 0.298 0.982 sum 11.123 -1.032 -0.841 11.203 Atomic orbital electron populations 1.69729 1.06751 1.28268 1.45029 1.25314 0.94932 0.99358 0.92046 0.86469 0.79229 0.82317 0.78573 1.17959 1.23447 1.20257 1.18768 0.82846 0.95953 1.49796 0.88438 1.43061 1.07341 1.43221 1.21205 1.19147 0.87420 0.84644 0.81798 1.90554 1.54315 1.43366 1.53956 1.23060 0.98556 1.05855 0.93594 0.85861 1.23632 1.03925 0.92886 0.99737 1.22110 0.84417 0.91977 1.01553 0.84481 1.92778 1.46027 1.80981 1.96991 1.21893 0.95400 0.99993 0.87150 1.23133 1.01839 0.94101 1.01790 1.23284 1.00271 0.99530 1.00720 0.91696 0.86095 0.87607 0.87048 0.87059 0.89389 0.89484 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.14 13.96 55.50 0.77 -25.36 15 2 C 0.09 2.71 4.87 -17.47 -0.09 2.63 15 3 Si 0.90 23.98 24.85 -169.99 -4.22 19.75 15 4 H -0.25 -7.02 6.34 56.52 0.36 -6.67 15 5 H -0.31 -7.94 7.11 56.52 0.40 -7.53 15 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 7 C -0.35 -9.65 8.57 -14.93 -0.13 -9.78 15 8 H 0.10 2.82 7.13 -52.49 -0.37 2.44 15 9 N -0.43 -10.27 2.47 -107.73 -0.27 -10.53 15 10 C 0.48 11.34 5.66 -10.99 -0.06 11.28 15 11 O -0.54 -14.69 11.93 5.55 0.07 -14.63 15 12 C -0.19 -3.42 4.93 -91.77 -0.45 -3.87 15 13 H 0.12 2.02 7.31 -51.93 -0.38 1.64 15 14 C -0.16 -2.56 10.03 -26.69 -0.27 -2.83 15 15 C 0.04 0.57 7.60 -26.69 -0.20 0.36 15 16 H 0.14 2.10 8.14 -51.93 -0.42 1.68 15 17 F -0.19 -2.91 17.60 2.25 0.04 -2.87 15 18 C 0.06 1.16 5.62 -67.93 -0.38 0.78 15 19 C -0.17 -2.95 9.81 -26.69 -0.26 -3.22 15 20 C -0.20 -3.44 10.36 -26.69 -0.28 -3.72 15 21 H 0.27 7.79 8.31 -40.82 -0.34 7.45 15 22 H 0.12 2.01 7.67 -51.93 -0.40 1.61 15 23 H 0.11 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.11 1.83 7.12 -51.93 -0.37 1.46 15 25 H 0.11 2.18 6.56 -51.93 -0.34 1.84 15 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.10 1.88 8.14 -51.93 -0.42 1.46 15 LS Contribution 243.62 15.07 3.67 3.67 Total: -1.00 -31.84 243.62 -5.21 -37.05 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.15 Total: 1.28 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.12 Total: -8.36 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.51 Total: -35.90 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.07 Total: -14.63 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -4.22 Total: 19.75 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.84 -5.21 -37.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047080.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.489 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds