Wall clock time and date at job start Sun Mar 29 2020 21:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86808 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47194 * 274.15441 * 3 2 1 5 5 H 1.48504 * 109.46897 * 34.15147 * 3 2 1 6 6 H 1.48500 * 109.47133 * 154.15363 * 3 2 1 7 7 C 1.38950 * 120.00567 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 341.48650 * 7 2 1 9 9 N 1.37098 * 120.00178 * 161.76992 * 7 2 1 10 10 C 1.34779 * 119.99813 * 315.77453 * 9 7 2 11 11 O 1.21289 * 119.99782 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99940 * 180.02562 * 10 9 7 13 13 H 1.09003 * 115.55012 * 325.58357 * 12 10 9 14 14 C 1.52999 * 117.49929 * 179.91569 * 12 10 9 15 15 C 1.53001 * 117.50053 * 111.25422 * 12 10 9 16 16 H 1.09001 * 117.49493 * 0.02562 * 15 12 10 17 17 F 1.39902 * 117.50135 * 214.98144 * 15 12 10 18 18 C 1.46499 * 120.00171 * 135.77938 * 9 7 2 19 19 C 1.53003 * 117.50023 * 3.28899 * 18 9 7 20 20 C 1.53001 * 117.50023 * 294.62994 * 18 9 7 21 21 H 0.97001 * 120.00716 * 359.97438 * 1 2 3 22 22 H 1.08994 * 117.49792 * 359.97438 * 14 12 10 23 23 H 1.08998 * 117.49968 * 144.99687 * 14 12 10 24 24 H 1.08999 * 115.55227 * 148.95660 * 18 9 7 25 25 H 1.09006 * 117.49768 * 0.02562 * 19 18 9 26 26 H 1.08991 * 117.50049 * 145.02018 * 19 18 9 27 27 H 1.09001 * 117.50250 * 214.98113 * 20 18 9 28 28 H 1.09005 * 117.49589 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4077 2.0973 -1.3964 5 1 1.4920 2.6258 0.7860 6 1 3.5867 1.4166 0.6104 7 6 2.0089 -1.2033 -0.0005 8 1 1.5109 -2.1146 0.2960 9 7 3.3283 -1.2328 -0.3720 10 6 3.7380 -0.5484 -1.4583 11 8 2.9395 0.0941 -2.1070 12 6 5.1881 -0.5813 -1.8670 13 1 5.9062 -0.6326 -1.0485 14 6 5.5900 0.2146 -3.1103 15 6 5.5405 -1.3144 -3.1628 16 1 4.7233 -1.7726 -3.7200 17 9 6.7598 -1.9990 -3.2067 18 6 4.2928 -2.0084 0.4119 19 6 3.7534 -2.8253 1.5878 20 6 4.5651 -1.5537 1.8471 21 1 -0.4851 0.8400 0.0004 22 1 4.8054 0.7617 -3.6330 23 1 6.5723 0.6869 -3.1098 24 1 5.1276 -2.4267 -0.1505 25 1 2.6807 -2.7859 1.7779 26 1 4.2335 -3.7806 1.7992 27 1 5.5790 -1.6731 2.2291 28 1 4.0270 -0.6772 2.2080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121047080.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:25 Heat of formation + Delta-G solvation = -35.404418 kcal Electronic energy + Delta-G solvation = -14563.110784 eV Core-core repulsion = 11916.250546 eV Total energy + Delta-G solvation = -2646.860238 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.69706 -41.08082 -38.31017 -36.63015 -34.87981 -33.41774 -27.94097 -24.74841 -23.39747 -23.22843 -22.80577 -20.87041 -19.31709 -18.15903 -17.30268 -17.22323 -16.73948 -15.78585 -15.74874 -15.28449 -15.05143 -14.84565 -14.63547 -13.63550 -13.50229 -13.19918 -12.85179 -12.48521 -12.18399 -12.11943 -11.69915 -11.54796 -11.24410 -11.18360 -10.79568 -10.49090 -9.42206 -8.47153 -6.23427 1.15065 1.30739 1.43311 1.62816 2.33502 2.44425 2.65202 2.91814 3.07367 3.30339 3.58653 3.65207 3.96988 4.04690 4.12075 4.17221 4.30252 4.67724 4.86583 4.89255 4.97188 5.09853 5.21440 5.43940 5.66411 5.83560 6.69379 6.84416 7.28233 7.80527 8.62099 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.014473 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.784659 B = 1934.143840 C = 2508.753400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.044 3.956 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.302 1.302 6 H -0.261 1.261 7 C -0.339 4.339 8 H 0.072 0.928 9 N -0.446 5.446 10 C 0.476 3.524 11 O -0.585 6.585 12 C -0.203 4.203 13 H 0.149 0.851 14 C -0.150 4.150 15 C 0.056 3.944 16 H 0.138 0.862 17 F -0.180 7.180 18 C 0.041 3.959 19 C -0.167 4.167 20 C -0.185 4.185 21 H 0.273 0.727 22 H 0.107 0.893 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 -2.581 -0.705 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.160 4.160 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.231 1.231 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.090 0.910 9 N -0.165 5.165 10 C 0.267 3.733 11 O -0.471 6.471 12 C -0.225 4.225 13 H 0.167 0.833 14 C -0.188 4.188 15 C 0.019 3.981 16 H 0.156 0.844 17 F -0.160 7.160 18 C -0.063 4.063 19 C -0.204 4.204 20 C -0.223 4.223 21 H 0.083 0.917 22 H 0.126 0.874 23 H 0.159 0.841 24 H 0.164 0.836 25 H 0.095 0.905 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.949 -2.230 -1.001 14.161 hybrid contribution -0.428 0.747 0.220 0.889 sum 13.520 -1.483 -0.780 13.624 Atomic orbital electron populations 1.69813 1.07961 1.28746 1.48132 1.25950 0.95448 1.02023 0.92598 0.85660 0.79070 0.79658 0.77331 1.20029 1.23106 1.18511 1.18651 0.85070 0.94676 1.48237 0.91024 1.43251 1.06875 1.44030 1.22389 1.20070 0.89606 0.82789 0.80853 1.90523 1.56346 1.45062 1.55129 1.22958 0.94917 1.09039 0.95552 0.83328 1.23761 1.05077 0.92815 0.97128 1.21971 0.84557 0.92346 0.99231 0.84442 1.92803 1.45574 1.80875 1.96787 1.22245 0.95585 1.00654 0.87838 1.23170 1.00397 0.96207 1.00642 1.23335 1.02113 0.98164 0.98692 0.91729 0.87449 0.84134 0.83584 0.90477 0.85303 0.85005 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.26 13.96 21.66 0.30 -56.96 15 2 C 0.04 2.65 4.87 84.93 0.41 3.06 15 3 Si 0.95 50.39 24.85 68.60 1.70 52.09 15 4 H -0.27 -15.22 6.34 99.48 0.63 -14.59 15 5 H -0.30 -15.50 7.11 99.48 0.71 -14.80 15 6 H -0.26 -12.81 7.11 99.48 0.71 -12.10 15 7 C -0.34 -19.27 8.57 84.04 0.72 -18.55 15 8 H 0.07 4.34 7.13 -2.91 -0.02 4.32 15 9 N -0.45 -21.01 2.47 -613.13 -1.51 -22.52 15 10 C 0.48 21.90 5.66 87.65 0.50 22.39 15 11 O -0.59 -32.03 11.93 -3.06 -0.04 -32.07 15 12 C -0.20 -6.68 4.93 -11.54 -0.06 -6.74 15 13 H 0.15 4.14 7.31 -2.39 -0.02 4.12 15 14 C -0.15 -4.17 10.03 30.62 0.31 -3.86 15 15 C 0.06 1.56 7.60 30.62 0.23 1.79 15 16 H 0.14 3.89 8.14 -2.39 -0.02 3.87 15 17 F -0.18 -4.79 17.60 44.97 0.79 -3.99 15 18 C 0.04 1.44 5.62 44.99 0.25 1.69 15 19 C -0.17 -5.38 9.81 30.62 0.30 -5.08 15 20 C -0.18 -5.77 10.36 30.62 0.32 -5.45 15 21 H 0.27 16.26 8.31 -92.71 -0.77 15.49 15 22 H 0.11 3.35 7.67 -2.39 -0.02 3.33 15 23 H 0.14 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.15 4.11 7.12 -2.39 -0.02 4.09 15 25 H 0.08 3.05 6.56 -2.38 -0.02 3.03 15 26 H 0.13 3.08 8.14 -2.39 -0.02 3.07 15 27 H 0.13 2.97 8.14 -2.39 -0.02 2.95 15 28 H 0.07 2.51 8.14 -2.38 -0.02 2.49 15 Total: -1.00 -71.34 243.62 5.32 -66.02 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.09 Total: 8.18 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 2.98 Total: -10.75 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.21 Total: -79.48 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.04 Total: -32.07 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.79 Total: -3.99 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.70 Total: 52.09 kcal Total: -71.34 5.32 -66.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047080.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.619 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds