Wall clock time and date at job start Sun Mar 29 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48501 * 109.47068 * 272.87184 * 3 2 1 5 5 H 1.48496 * 109.47262 * 32.87437 * 3 2 1 6 6 H 1.48507 * 109.47016 * 152.87470 * 3 2 1 7 7 C 1.38952 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00271 * 338.38353 * 7 2 1 9 9 N 1.37104 * 119.99907 * 158.38667 * 7 2 1 10 10 C 1.34770 * 119.99819 * 318.27592 * 9 7 2 11 11 O 1.21288 * 120.00725 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99753 * 179.72433 * 10 9 7 13 13 H 1.09001 * 115.55405 * 34.33260 * 12 10 9 14 14 C 1.52998 * 117.49969 * 180.02562 * 12 10 9 15 15 C 1.52996 * 60.00244 * 107.48816 * 14 12 10 16 16 H 1.09002 * 117.49895 * 107.49013 * 15 14 12 17 17 F 1.39898 * 117.49845 * 252.50677 * 15 14 12 18 18 C 1.46501 * 119.99711 * 138.27998 * 9 7 2 19 19 C 1.52995 * 117.50183 * 3.69615 * 18 9 7 20 20 C 1.52996 * 117.49680 * 295.03481 * 18 9 7 21 21 H 0.96990 * 120.00114 * 359.97438 * 1 2 3 22 22 H 1.09003 * 117.49812 * 214.98141 * 14 12 10 23 23 H 1.09001 * 117.49943 * 359.97438 * 14 12 10 24 24 H 1.08996 * 115.54752 * 149.37086 * 18 9 7 25 25 H 1.08999 * 117.49807 * 0.02562 * 19 18 9 26 26 H 1.08999 * 117.50332 * 145.01889 * 19 18 9 27 27 H 1.09007 * 117.50066 * 214.98068 * 20 18 9 28 28 H 1.09005 * 117.50359 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4348 2.0814 -1.3983 5 1 1.4773 2.6343 0.7599 6 1 3.5748 1.4233 0.6384 7 6 2.0089 -1.2034 -0.0005 8 1 1.5258 -2.1060 0.3436 9 7 3.3076 -1.2449 -0.4379 10 6 3.6716 -0.5522 -1.5352 11 8 2.8504 0.1084 -2.1355 12 6 5.1005 -0.5929 -2.0123 13 1 5.6192 -1.5398 -1.8630 14 6 5.4508 0.2151 -3.2634 15 6 5.9235 0.6909 -1.8883 16 1 6.9839 0.5886 -1.6574 17 9 5.2921 1.8127 -1.3407 18 6 4.2996 -2.0424 0.2875 19 6 3.8070 -2.8744 1.4732 20 6 4.6421 -1.6147 1.7159 21 1 -0.4850 0.8400 0.0004 22 1 6.2001 -0.2002 -3.9373 23 1 4.6477 0.7758 -3.7416 24 1 5.1035 -2.4583 -0.3198 25 1 2.7448 -2.8288 1.7134 26 1 4.2871 -3.8376 1.6463 27 1 5.6713 -1.7496 2.0487 28 1 4.1297 -0.7397 2.1159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121047084.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:27 Heat of formation + Delta-G solvation = -7.243693 kcal Electronic energy + Delta-G solvation = -14862.941653 eV Core-core repulsion = 12217.302555 eV Total energy + Delta-G solvation = -2645.639097 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.24127 -39.17616 -36.66625 -35.15562 -32.83400 -31.38492 -26.00555 -22.99399 -22.11860 -21.83230 -21.16493 -18.97211 -17.50510 -16.54852 -15.98197 -15.26698 -14.76476 -14.27999 -13.96043 -13.70482 -13.38189 -12.90465 -12.49872 -12.19472 -11.92186 -11.38570 -11.08567 -10.70964 -10.46275 -10.19935 -10.00116 -9.89755 -9.80222 -9.49225 -8.51112 -8.47490 -7.46336 -6.18935 -3.93860 3.15329 3.58291 3.61923 3.77407 4.05868 4.22944 4.43360 4.55485 4.76203 4.93873 4.99627 5.21109 5.26054 5.40788 5.60098 5.63657 5.77392 5.85974 6.12303 6.17946 6.30378 6.38740 6.69397 6.86658 7.85687 7.98972 8.78463 8.93082 9.44618 9.83875 10.85786 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.018851 C = 0.013631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.359501 B = 1484.951053 C = 2053.578998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.095 3.905 3 Si 0.905 3.095 4 H -0.251 1.251 5 H -0.310 1.310 6 H -0.273 1.273 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.429 5.429 10 C 0.478 3.522 11 O -0.535 6.535 12 C -0.189 4.189 13 H 0.126 0.874 14 C -0.166 4.166 15 C 0.031 3.969 16 H 0.134 0.866 17 F -0.177 7.177 18 C 0.064 3.936 19 C -0.174 4.174 20 C -0.198 4.198 21 H 0.272 0.728 22 H 0.111 0.889 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.368 -2.443 -0.833 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.115 4.115 3 Si 0.735 3.265 4 H -0.177 1.177 5 H -0.240 1.240 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.114 0.886 9 N -0.148 5.148 10 C 0.268 3.732 11 O -0.417 6.417 12 C -0.211 4.211 13 H 0.144 0.856 14 C -0.204 4.204 15 C -0.006 4.006 16 H 0.151 0.849 17 F -0.157 7.157 18 C -0.042 4.042 19 C -0.211 4.211 20 C -0.237 4.237 21 H 0.082 0.918 22 H 0.129 0.871 23 H 0.134 0.866 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.717 -2.007 -1.124 12.923 hybrid contribution 0.373 0.770 0.233 0.887 sum 13.090 -1.237 -0.891 13.178 Atomic orbital electron populations 1.69769 1.06880 1.28259 1.44705 1.25298 0.94883 0.99519 0.91816 0.86573 0.79037 0.81935 0.78952 1.17686 1.23992 1.19843 1.18724 0.84912 0.96284 1.47823 0.88553 1.43028 1.08040 1.42582 1.21197 1.19076 0.87620 0.84846 0.81698 1.90566 1.51968 1.42360 1.56811 1.23101 0.97522 0.96900 1.03581 0.85573 1.23580 1.03797 1.02407 0.90580 1.22061 0.95276 0.83751 0.99478 0.84919 1.92832 1.83951 1.52529 1.86366 1.21819 0.95047 0.99615 0.87718 1.23143 1.01898 0.94010 1.02092 1.23267 0.99629 0.99660 1.01101 0.91812 0.87123 0.86645 0.87218 0.87145 0.89459 0.89572 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -27.01 13.96 55.50 0.77 -26.23 15 2 C 0.09 2.88 4.78 -17.47 -0.08 2.79 15 3 Si 0.91 25.57 23.74 -169.99 -4.04 21.54 15 4 H -0.25 -7.50 6.21 56.52 0.35 -7.15 15 5 H -0.31 -8.61 7.11 56.52 0.40 -8.21 15 6 H -0.27 -7.51 7.05 56.52 0.40 -7.12 15 7 C -0.35 -10.09 8.66 -14.93 -0.13 -10.22 15 8 H 0.10 2.85 7.00 -52.49 -0.37 2.48 15 9 N -0.43 -10.57 2.50 -107.73 -0.27 -10.84 15 10 C 0.48 11.77 5.34 -10.99 -0.06 11.71 15 11 O -0.54 -15.46 11.76 5.55 0.07 -15.40 15 12 C -0.19 -3.39 5.32 -91.77 -0.49 -3.87 15 13 H 0.13 1.77 6.59 -51.93 -0.34 1.43 15 14 C -0.17 -2.56 10.03 -26.73 -0.27 -2.83 15 15 C 0.03 0.50 7.83 -26.73 -0.21 0.30 15 16 H 0.13 1.52 8.14 -51.93 -0.42 1.09 15 17 F -0.18 -3.76 15.78 2.25 0.04 -3.72 15 18 C 0.06 1.21 5.90 -67.93 -0.40 0.81 15 19 C -0.17 -3.01 9.81 -26.70 -0.26 -3.28 15 20 C -0.20 -3.46 10.35 -26.70 -0.28 -3.74 15 21 H 0.27 8.07 8.31 -40.82 -0.34 7.73 15 22 H 0.11 1.22 8.14 -51.93 -0.42 0.79 15 23 H 0.12 2.10 7.67 -51.93 -0.40 1.70 15 24 H 0.11 1.69 6.46 -51.93 -0.34 1.35 15 25 H 0.11 2.20 6.51 -51.93 -0.34 1.86 15 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.10 1.95 8.14 -51.93 -0.42 1.53 15 LS Contribution 239.37 15.07 3.61 3.61 Total: -1.00 -35.23 239.37 -5.08 -40.31 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -3.08 Total: -0.93 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.18 Total: -8.33 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.51 Total: -37.08 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.07 Total: -15.40 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -4.04 Total: 21.54 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -35.23 -5.08 -40.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047084.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.067 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds