Wall clock time and date at job start Sun Mar 29 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48501 * 109.47068 * 272.87184 * 3 2 1 5 5 H 1.48496 * 109.47262 * 32.87437 * 3 2 1 6 6 H 1.48507 * 109.47016 * 152.87470 * 3 2 1 7 7 C 1.38952 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00271 * 338.38353 * 7 2 1 9 9 N 1.37104 * 119.99907 * 158.38667 * 7 2 1 10 10 C 1.34770 * 119.99819 * 318.27592 * 9 7 2 11 11 O 1.21288 * 120.00725 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99753 * 179.72433 * 10 9 7 13 13 H 1.09001 * 115.55405 * 34.33260 * 12 10 9 14 14 C 1.52998 * 117.49969 * 180.02562 * 12 10 9 15 15 C 1.52996 * 60.00244 * 107.48816 * 14 12 10 16 16 H 1.09002 * 117.49895 * 107.49013 * 15 14 12 17 17 F 1.39898 * 117.49845 * 252.50677 * 15 14 12 18 18 C 1.46501 * 119.99711 * 138.27998 * 9 7 2 19 19 C 1.52995 * 117.50183 * 3.69615 * 18 9 7 20 20 C 1.52996 * 117.49680 * 295.03481 * 18 9 7 21 21 H 0.96990 * 120.00114 * 359.97438 * 1 2 3 22 22 H 1.09003 * 117.49812 * 214.98141 * 14 12 10 23 23 H 1.09001 * 117.49943 * 359.97438 * 14 12 10 24 24 H 1.08996 * 115.54752 * 149.37086 * 18 9 7 25 25 H 1.08999 * 117.49807 * 0.02562 * 19 18 9 26 26 H 1.08999 * 117.50332 * 145.01889 * 19 18 9 27 27 H 1.09007 * 117.50066 * 214.98068 * 20 18 9 28 28 H 1.09005 * 117.50359 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4348 2.0814 -1.3983 5 1 1.4773 2.6343 0.7599 6 1 3.5748 1.4233 0.6384 7 6 2.0089 -1.2034 -0.0005 8 1 1.5258 -2.1060 0.3436 9 7 3.3076 -1.2449 -0.4379 10 6 3.6716 -0.5522 -1.5352 11 8 2.8504 0.1084 -2.1355 12 6 5.1005 -0.5929 -2.0123 13 1 5.6192 -1.5398 -1.8630 14 6 5.4508 0.2151 -3.2634 15 6 5.9235 0.6909 -1.8883 16 1 6.9839 0.5886 -1.6574 17 9 5.2921 1.8127 -1.3407 18 6 4.2996 -2.0424 0.2875 19 6 3.8070 -2.8744 1.4732 20 6 4.6421 -1.6147 1.7159 21 1 -0.4850 0.8400 0.0004 22 1 6.2001 -0.2002 -3.9373 23 1 4.6477 0.7758 -3.7416 24 1 5.1035 -2.4583 -0.3198 25 1 2.7448 -2.8288 1.7134 26 1 4.2871 -3.8376 1.6463 27 1 5.6713 -1.7496 2.0487 28 1 4.1297 -0.7397 2.1159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121047084.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:27 Heat of formation + Delta-G solvation = -32.882215 kcal Electronic energy + Delta-G solvation = -14864.053422 eV Core-core repulsion = 12217.302555 eV Total energy + Delta-G solvation = -2646.750867 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.69479 -40.97314 -38.23517 -36.65037 -34.88447 -33.40686 -27.97237 -24.72339 -23.33465 -23.20871 -22.75703 -20.83471 -19.12567 -18.31016 -17.63583 -16.88854 -16.50982 -15.94115 -15.65099 -15.48836 -15.10418 -14.70857 -14.39348 -13.81829 -13.52154 -13.19359 -12.76276 -12.58534 -12.19958 -12.11078 -11.66334 -11.33387 -11.28991 -11.02602 -10.74589 -10.41706 -9.41278 -8.51032 -6.21023 1.11891 1.32022 1.45554 1.70045 2.33522 2.51017 2.72800 2.92503 3.16296 3.35493 3.67060 3.69070 4.04521 4.08643 4.17259 4.26588 4.35928 4.79216 4.87570 4.89672 5.00099 5.17110 5.24766 5.46520 5.64460 5.82496 6.71618 6.87211 7.31041 7.86177 8.57812 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.018851 C = 0.013631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.359501 B = 1484.951053 C = 2053.578998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.047 3.953 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.310 1.310 6 H -0.263 1.263 7 C -0.340 4.340 8 H 0.075 0.925 9 N -0.448 5.448 10 C 0.466 3.534 11 O -0.593 6.593 12 C -0.204 4.204 13 H 0.177 0.823 14 C -0.154 4.154 15 C 0.030 3.970 16 H 0.197 0.803 17 F -0.213 7.213 18 C 0.044 3.956 19 C -0.169 4.169 20 C -0.187 4.187 21 H 0.271 0.729 22 H 0.168 0.832 23 H 0.076 0.924 24 H 0.161 0.839 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.665 -3.827 -0.909 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.157 4.157 3 Si 0.787 3.213 4 H -0.209 1.209 5 H -0.240 1.240 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.093 0.907 9 N -0.168 5.168 10 C 0.258 3.742 11 O -0.478 6.478 12 C -0.225 4.225 13 H 0.194 0.806 14 C -0.191 4.191 15 C -0.005 4.005 16 H 0.214 0.786 17 F -0.193 7.193 18 C -0.060 4.060 19 C -0.207 4.207 20 C -0.225 4.225 21 H 0.081 0.919 22 H 0.186 0.814 23 H 0.095 0.905 24 H 0.178 0.822 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.049 -3.413 -1.164 17.427 hybrid contribution -0.919 1.090 0.201 1.440 sum 16.130 -2.323 -0.964 16.325 Atomic orbital electron populations 1.69843 1.07852 1.28506 1.48199 1.25861 0.95331 1.01751 0.92773 0.85763 0.78640 0.79975 0.76964 1.20851 1.23987 1.18734 1.18670 0.87358 0.94906 1.45734 0.90699 1.43272 1.07773 1.43527 1.22221 1.20327 0.90369 0.82735 0.80773 1.90529 1.54530 1.44441 1.58281 1.23126 0.93401 1.00217 1.05760 0.80578 1.23736 1.03727 1.00940 0.90720 1.22907 0.97276 0.81004 0.99351 0.78608 1.92759 1.85005 1.54580 1.86996 1.22320 0.95170 0.99811 0.88650 1.23187 1.00311 0.96231 1.00954 1.23308 1.01743 0.98122 0.99343 0.91942 0.81424 0.90511 0.82217 0.90964 0.84887 0.84697 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.60 13.96 21.66 0.30 -59.29 15 2 C 0.05 2.99 4.78 84.93 0.41 3.40 15 3 Si 0.96 55.21 23.74 68.60 1.63 56.84 15 4 H -0.28 -17.47 6.21 99.48 0.62 -16.85 15 5 H -0.31 -17.48 7.11 99.48 0.71 -16.77 15 6 H -0.26 -14.39 7.05 99.48 0.70 -13.69 15 7 C -0.34 -20.00 8.66 84.04 0.73 -19.28 15 8 H 0.08 4.63 7.00 -2.91 -0.02 4.61 15 9 N -0.45 -21.72 2.50 -613.15 -1.53 -23.25 15 10 C 0.47 22.49 5.34 87.66 0.47 22.96 15 11 O -0.59 -35.03 11.76 -3.05 -0.04 -35.07 15 12 C -0.20 -6.42 5.32 -11.54 -0.06 -6.48 15 13 H 0.18 3.68 6.59 -2.39 -0.02 3.66 15 14 C -0.15 -4.14 10.03 30.59 0.31 -3.83 15 15 C 0.03 0.84 7.83 30.59 0.24 1.08 15 16 H 0.20 2.97 8.14 -2.39 -0.02 2.95 15 17 F -0.21 -8.67 15.78 44.97 0.71 -7.96 15 18 C 0.04 1.52 5.90 44.99 0.27 1.79 15 19 C -0.17 -5.39 9.81 30.62 0.30 -5.09 15 20 C -0.19 -5.87 10.35 30.62 0.32 -5.55 15 21 H 0.27 16.96 8.31 -92.72 -0.77 16.19 15 22 H 0.17 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.08 2.72 7.67 -2.39 -0.02 2.70 15 24 H 0.16 3.84 6.46 -2.39 -0.02 3.82 15 25 H 0.07 2.88 6.51 -2.39 -0.02 2.86 15 26 H 0.13 3.01 8.14 -2.39 -0.02 2.99 15 27 H 0.14 2.95 8.14 -2.38 -0.02 2.93 15 28 H 0.06 2.30 8.14 -2.38 -0.02 2.28 15 Total: -1.00 -84.62 239.37 5.12 -79.51 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 1.07 Total: 0.24 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 2.97 Total: -11.01 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.23 Total: -82.55 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.04 Total: -35.07 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.71 Total: -7.96 kcal Atomic # 14 Polarization: 55.21 SS G_CDS: 1.63 Total: 56.84 kcal Total: -84.62 5.12 -79.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047084.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.623 kcal (2) G-P(sol) polarization free energy of solvation -84.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds