Wall clock time and date at job start Sun Mar 29 2020 21:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99802 * 2 1 4 4 H 1.48500 * 109.47292 * 240.00054 * 3 2 1 5 5 H 1.48495 * 109.47332 * 119.99883 * 3 2 1 6 6 H 1.48499 * 109.47298 * 359.97438 * 3 2 1 7 7 C 1.38942 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00414 * 203.00023 * 7 2 1 9 9 N 1.37100 * 120.00065 * 23.00028 * 7 2 1 10 10 C 1.34777 * 119.99797 * 44.14453 * 9 7 2 11 11 O 1.21297 * 120.00004 * 0.02562 * 10 9 7 12 12 C 1.50707 * 120.00163 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.54818 * 34.40806 * 12 10 9 14 14 C 1.53001 * 117.49684 * 248.74978 * 12 10 9 15 15 C 1.52994 * 117.49855 * 180.08880 * 12 10 9 16 16 H 1.09005 * 117.49727 * 214.97362 * 15 12 10 17 17 F 1.39893 * 117.50256 * 359.97438 * 15 12 10 18 18 C 1.46494 * 120.00216 * 224.14626 * 9 7 2 19 19 C 1.53000 * 117.50111 * 3.08584 * 18 9 7 20 20 C 1.52998 * 60.00262 * 252.50905 * 19 18 9 21 21 H 0.97001 * 119.99903 * 185.69389 * 1 2 3 22 22 H 1.09003 * 117.49930 * 359.97438 * 14 12 10 23 23 H 1.09003 * 117.50026 * 145.01729 * 14 12 10 24 24 H 1.09002 * 115.55027 * 148.79408 * 18 9 7 25 25 H 1.09000 * 117.49604 * 0.02562 * 19 18 9 26 26 H 1.09003 * 117.50358 * 145.01747 * 19 18 9 27 27 H 1.08998 * 117.49913 * 252.51407 * 20 19 18 28 28 H 1.08999 * 117.49929 * 107.48283 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 3.1018 1.6965 1.2125 6 1 1.2831 2.7465 -0.0006 7 6 2.0089 -1.2032 0.0005 8 1 3.0245 -1.2403 0.3660 9 7 1.4052 -2.3436 -0.4629 10 6 0.6870 -2.3103 -1.6029 11 8 0.5752 -1.2715 -2.2190 12 6 0.0229 -3.5636 -2.1120 13 1 -0.3482 -4.2437 -1.3453 14 6 0.5738 -4.1823 -3.3984 15 6 -0.7764 -3.4612 -3.4125 16 1 -1.6733 -4.0742 -3.5016 17 9 -0.8354 -2.2111 -4.0378 18 6 1.5408 -3.5983 0.2810 19 6 2.3075 -3.5558 1.6044 20 6 2.9374 -4.2159 0.3762 21 1 -0.4850 -0.8359 0.0833 22 1 1.4162 -3.6826 -3.8766 23 1 0.5646 -5.2694 -3.4782 24 1 0.6928 -4.2797 0.2120 25 1 2.7107 -2.5941 1.9217 26 1 1.9639 -4.2091 2.4064 27 1 3.0081 -5.3036 0.3702 28 1 3.7553 -3.6886 -0.1147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121047085.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:29 Heat of formation + Delta-G solvation = -17.805378 kcal Electronic energy + Delta-G solvation = -14637.618643 eV Core-core repulsion = 11991.521557 eV Total energy + Delta-G solvation = -2646.097086 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -46.88534 -38.90298 -36.50298 -35.04458 -32.85701 -30.70831 -25.53698 -22.88556 -22.02809 -21.74723 -21.20927 -19.02466 -17.28363 -16.63360 -15.59326 -15.03196 -14.31031 -13.96114 -13.76388 -13.68282 -13.49462 -12.93376 -12.43025 -12.01051 -11.40510 -11.32196 -10.96342 -10.71607 -10.23493 -10.07028 -9.95638 -9.84327 -9.69815 -9.51685 -8.63683 -8.07448 -7.32698 -6.36443 -3.88337 3.41506 3.51482 3.57684 3.69160 4.15743 4.29637 4.54379 4.60868 4.82644 5.07891 5.12220 5.36534 5.42919 5.47350 5.68414 5.70310 5.77307 5.90704 6.14323 6.27697 6.35291 6.46658 6.65499 6.85880 7.89883 8.40849 8.82415 9.19041 9.56839 10.11387 10.92082 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.024679 B = 0.015064 C = 0.010260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.296344 B = 1858.237950 C = 2728.363333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.040 3.960 3 Si 1.076 2.924 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.431 4.431 8 H 0.070 0.930 9 N -0.428 5.428 10 C 0.486 3.514 11 O -0.521 6.521 12 C -0.189 4.189 13 H 0.119 0.881 14 C -0.172 4.172 15 C 0.040 3.960 16 H 0.128 0.872 17 F -0.165 7.165 18 C 0.070 3.930 19 C -0.173 4.173 20 C -0.202 4.202 21 H 0.270 0.730 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -10.139 -0.936 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.173 4.173 3 Si 0.903 3.097 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.557 4.557 8 H 0.088 0.912 9 N -0.149 5.149 10 C 0.273 3.727 11 O -0.398 6.398 12 C -0.211 4.211 13 H 0.136 0.864 14 C -0.210 4.210 15 C 0.004 3.996 16 H 0.145 0.855 17 F -0.145 7.145 18 C -0.036 4.036 19 C -0.211 4.211 20 C -0.241 4.241 21 H 0.080 0.920 22 H 0.123 0.877 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.126 0.874 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.818 -7.890 -1.349 8.046 hybrid contribution 0.212 -1.930 0.219 1.954 sum 1.029 -9.820 -1.130 9.938 Atomic orbital electron populations 1.70572 1.07504 1.30988 1.38277 1.26201 0.95979 1.02286 0.92871 0.83430 0.74979 0.74964 0.76346 1.21157 1.21549 1.20636 1.19738 0.98609 0.86827 1.50521 0.91184 1.42900 1.47418 1.06567 1.18020 1.19081 0.83974 0.87904 0.81774 1.90680 1.61005 1.31352 1.56771 1.23079 1.04307 1.01224 0.92536 0.86362 1.23544 0.97783 1.00034 0.99646 1.21877 0.96353 0.83962 0.97436 0.85464 1.92881 1.97231 1.41995 1.82382 1.21761 0.93525 0.90889 0.97431 1.23086 1.04397 1.02780 0.90829 1.23263 0.98742 0.98654 1.03462 0.91952 0.87682 0.87379 0.88066 0.87374 0.89733 0.89740 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -26.32 12.41 55.50 0.69 -25.63 15 2 C 0.04 1.16 4.22 -17.47 -0.07 1.09 15 3 Si 1.08 26.28 29.98 -169.99 -5.10 21.19 15 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.43 -12.10 7.87 -14.93 -0.12 -12.22 15 8 H 0.07 1.93 7.28 -52.49 -0.38 1.54 15 9 N -0.43 -10.89 2.58 -107.73 -0.28 -11.17 15 10 C 0.49 12.59 6.23 -10.98 -0.07 12.52 15 11 O -0.52 -15.99 13.07 5.54 0.07 -15.92 15 12 C -0.19 -3.65 5.31 -91.77 -0.49 -4.14 15 13 H 0.12 1.92 6.60 -51.93 -0.34 1.58 15 14 C -0.17 -2.73 10.22 -26.69 -0.27 -3.00 15 15 C 0.04 0.71 7.83 -26.70 -0.21 0.50 15 16 H 0.13 1.66 8.14 -51.93 -0.42 1.24 15 17 F -0.16 -3.74 15.71 2.25 0.04 -3.70 15 18 C 0.07 1.40 5.89 -67.93 -0.40 1.00 15 19 C -0.17 -3.15 9.80 -26.73 -0.26 -3.41 15 20 C -0.20 -3.49 10.36 -26.73 -0.28 -3.77 15 21 H 0.27 8.51 7.43 -40.82 -0.30 8.20 15 22 H 0.10 1.84 8.14 -51.93 -0.42 1.42 15 23 H 0.11 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.10 1.77 6.48 -51.93 -0.34 1.43 15 25 H 0.11 2.21 6.72 -51.93 -0.35 1.86 15 26 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15 LS Contribution 246.16 15.07 3.71 3.71 Total: -1.00 -34.92 246.16 -6.08 -41.01 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.05 Total: 1.93 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.17 Total: -11.42 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.41 Total: -36.80 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.07 Total: -15.92 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.70 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.10 Total: 21.19 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -34.92 -6.08 -41.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047085.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.201 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds