Wall clock time and date at job start Sun Mar 29 2020 21:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99802 * 2 1 4 4 H 1.48500 * 109.47292 * 240.00054 * 3 2 1 5 5 H 1.48495 * 109.47332 * 119.99883 * 3 2 1 6 6 H 1.48499 * 109.47298 * 359.97438 * 3 2 1 7 7 C 1.38942 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00414 * 203.00023 * 7 2 1 9 9 N 1.37100 * 120.00065 * 23.00028 * 7 2 1 10 10 C 1.34777 * 119.99797 * 44.14453 * 9 7 2 11 11 O 1.21297 * 120.00004 * 0.02562 * 10 9 7 12 12 C 1.50707 * 120.00163 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.54818 * 34.40806 * 12 10 9 14 14 C 1.53001 * 117.49684 * 248.74978 * 12 10 9 15 15 C 1.52994 * 117.49855 * 180.08880 * 12 10 9 16 16 H 1.09005 * 117.49727 * 214.97362 * 15 12 10 17 17 F 1.39893 * 117.50256 * 359.97438 * 15 12 10 18 18 C 1.46494 * 120.00216 * 224.14626 * 9 7 2 19 19 C 1.53000 * 117.50111 * 3.08584 * 18 9 7 20 20 C 1.52998 * 60.00262 * 252.50905 * 19 18 9 21 21 H 0.97001 * 119.99903 * 185.69389 * 1 2 3 22 22 H 1.09003 * 117.49930 * 359.97438 * 14 12 10 23 23 H 1.09003 * 117.50026 * 145.01729 * 14 12 10 24 24 H 1.09002 * 115.55027 * 148.79408 * 18 9 7 25 25 H 1.09000 * 117.49604 * 0.02562 * 19 18 9 26 26 H 1.09003 * 117.50358 * 145.01747 * 19 18 9 27 27 H 1.08998 * 117.49913 * 252.51407 * 20 19 18 28 28 H 1.08999 * 117.49929 * 107.48283 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 3.1018 1.6965 1.2125 6 1 1.2831 2.7465 -0.0006 7 6 2.0089 -1.2032 0.0005 8 1 3.0245 -1.2403 0.3660 9 7 1.4052 -2.3436 -0.4629 10 6 0.6870 -2.3103 -1.6029 11 8 0.5752 -1.2715 -2.2190 12 6 0.0229 -3.5636 -2.1120 13 1 -0.3482 -4.2437 -1.3453 14 6 0.5738 -4.1823 -3.3984 15 6 -0.7764 -3.4612 -3.4125 16 1 -1.6733 -4.0742 -3.5016 17 9 -0.8354 -2.2111 -4.0378 18 6 1.5408 -3.5983 0.2810 19 6 2.3075 -3.5558 1.6044 20 6 2.9374 -4.2159 0.3762 21 1 -0.4850 -0.8359 0.0833 22 1 1.4162 -3.6826 -3.8766 23 1 0.5646 -5.2694 -3.4782 24 1 0.6928 -4.2797 0.2120 25 1 2.7107 -2.5941 1.9217 26 1 1.9639 -4.2091 2.4064 27 1 3.0081 -5.3036 0.3702 28 1 3.7553 -3.6886 -0.1147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121047085.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:29 Heat of formation + Delta-G solvation = -41.488103 kcal Electronic energy + Delta-G solvation = -14638.645603 eV Core-core repulsion = 11991.521557 eV Total energy + Delta-G solvation = -2647.124046 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.45236 -40.72643 -38.11750 -36.64299 -34.86714 -32.69780 -27.51516 -24.65342 -23.35585 -23.14423 -22.86675 -20.89192 -18.92771 -18.48919 -17.14017 -16.72127 -16.08325 -15.75202 -15.57117 -15.37170 -15.18748 -14.63233 -14.01693 -13.57769 -13.30920 -12.93994 -12.71295 -12.32345 -12.01493 -11.88665 -11.79642 -11.39723 -11.25299 -10.93042 -10.68912 -10.06786 -9.34792 -8.58289 -6.09472 1.44207 1.56920 1.73546 1.88573 2.42156 2.68113 2.88592 3.05838 3.21847 3.36769 3.74382 3.75911 4.00289 4.10601 4.19038 4.26403 4.32401 4.70435 4.81624 4.89612 4.96158 5.14833 5.19303 5.39637 5.71210 6.14918 6.83248 7.14313 7.50249 8.13727 8.67374 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.024679 B = 0.015064 C = 0.010260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.296344 B = 1858.237950 C = 2728.363333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C -0.011 4.011 3 Si 1.114 2.886 4 H -0.289 1.289 5 H -0.253 1.253 6 H -0.287 1.287 7 C -0.435 4.435 8 H 0.067 0.933 9 N -0.446 5.446 10 C 0.469 3.531 11 O -0.587 6.587 12 C -0.209 4.209 13 H 0.155 0.845 14 C -0.139 4.139 15 C 0.026 3.974 16 H 0.182 0.818 17 F -0.203 7.203 18 C 0.041 3.959 19 C -0.173 4.173 20 C -0.175 4.175 21 H 0.254 0.746 22 H 0.080 0.920 23 H 0.167 0.833 24 H 0.134 0.866 25 H 0.076 0.924 26 H 0.122 0.878 27 H 0.131 0.869 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -13.146 -0.593 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.217 4.217 3 Si 0.936 3.064 4 H -0.215 1.215 5 H -0.177 1.177 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.085 0.915 9 N -0.166 5.166 10 C 0.258 3.742 11 O -0.469 6.469 12 C -0.231 4.231 13 H 0.172 0.828 14 C -0.176 4.176 15 C -0.010 4.010 16 H 0.198 0.802 17 F -0.183 7.183 18 C -0.064 4.064 19 C -0.210 4.210 20 C -0.213 4.213 21 H 0.063 0.937 22 H 0.098 0.902 23 H 0.185 0.815 24 H 0.151 0.849 25 H 0.094 0.906 26 H 0.140 0.860 27 H 0.149 0.851 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.270 -10.946 -0.963 11.061 hybrid contribution 0.159 -1.101 0.104 1.118 sum 1.429 -12.047 -0.859 12.162 Atomic orbital electron populations 1.70694 1.08528 1.29878 1.42022 1.27486 0.96096 1.05778 0.92333 0.82976 0.74311 0.71577 0.77582 1.21535 1.17680 1.21218 1.19891 0.98587 0.88331 1.49362 0.91521 1.43156 1.47025 1.07721 1.18727 1.20210 0.83265 0.89440 0.81257 1.90628 1.63262 1.34353 1.58624 1.23001 1.06209 0.99337 0.94545 0.82795 1.23694 0.95694 1.02739 0.95487 1.22680 0.99517 0.83025 0.95756 0.80150 1.92802 1.97532 1.44999 1.82994 1.22125 0.96332 0.89441 0.98459 1.23136 1.03917 1.02323 0.91632 1.23281 0.95789 1.00834 1.01403 0.93698 0.90172 0.81516 0.84862 0.90558 0.86029 0.85144 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -57.08 12.41 21.66 0.27 -56.81 15 2 C -0.01 -0.66 4.22 84.92 0.36 -0.30 15 3 Si 1.11 54.39 29.98 68.60 2.06 56.44 15 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 15 5 H -0.25 -10.71 7.11 99.48 0.71 -10.01 15 6 H -0.29 -14.12 7.11 99.48 0.71 -13.41 15 7 C -0.43 -25.00 7.87 84.04 0.66 -24.34 15 8 H 0.07 3.76 7.28 -2.91 -0.02 3.74 15 9 N -0.45 -22.80 2.58 -613.13 -1.58 -24.38 15 10 C 0.47 24.58 6.23 87.66 0.55 25.13 15 11 O -0.59 -37.53 13.07 -3.08 -0.04 -37.57 15 12 C -0.21 -7.59 5.31 -11.54 -0.06 -7.65 15 13 H 0.15 4.36 6.60 -2.39 -0.02 4.35 15 14 C -0.14 -3.89 10.22 30.62 0.31 -3.58 15 15 C 0.03 0.85 7.83 30.62 0.24 1.09 15 16 H 0.18 3.87 8.14 -2.38 -0.02 3.86 15 17 F -0.20 -9.31 15.71 44.97 0.71 -8.61 15 18 C 0.04 1.54 5.89 44.99 0.27 1.81 15 19 C -0.17 -5.87 9.80 30.59 0.30 -5.57 15 20 C -0.17 -5.44 10.36 30.60 0.32 -5.13 15 21 H 0.25 16.71 7.43 -92.71 -0.69 16.03 15 22 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.17 2.75 8.14 -2.39 -0.02 2.73 15 24 H 0.13 4.12 6.48 -2.39 -0.02 4.10 15 25 H 0.08 3.10 6.72 -2.39 -0.02 3.08 15 26 H 0.12 3.21 8.14 -2.39 -0.02 3.19 15 27 H 0.13 2.92 8.14 -2.39 -0.02 2.90 15 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -82.78 246.16 5.59 -77.19 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.25 Total: 12.27 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 2.94 Total: -18.54 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.31 Total: -81.19 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.04 Total: -37.57 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 0.71 Total: -8.61 kcal Atomic # 14 Polarization: 54.39 SS G_CDS: 2.06 Total: 56.44 kcal Total: -82.78 5.59 -77.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047085.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.697 kcal (2) G-P(sol) polarization free energy of solvation -82.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds