Wall clock time and date at job start Sun Mar 29 2020 21:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47398 * 300.00594 * 3 2 1 6 6 H 1.48508 * 109.47028 * 60.00263 * 3 2 1 7 7 C 1.38952 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99941 * 198.29623 * 7 2 1 9 9 N 1.37097 * 120.00479 * 18.28833 * 7 2 1 10 10 C 1.34786 * 119.99417 * 44.27293 * 9 7 2 11 11 O 1.21288 * 120.00098 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99796 * 180.02562 * 10 9 7 13 13 H 1.09001 * 115.54517 * 325.57958 * 12 10 9 14 14 C 1.52995 * 117.49841 * 111.25092 * 12 10 9 15 15 C 1.53002 * 117.49807 * 179.91260 * 12 10 9 16 16 H 1.08995 * 117.49710 * 0.02562 * 15 12 10 17 17 F 1.39898 * 117.49561 * 144.99770 * 15 12 10 18 18 C 1.46497 * 120.00707 * 224.27449 * 9 7 2 19 19 C 1.53004 * 117.49450 * 3.24662 * 18 9 7 20 20 C 1.53001 * 60.00018 * 252.51547 * 19 18 9 21 21 H 0.96994 * 119.99554 * 354.92465 * 1 2 3 22 22 H 1.09006 * 117.49915 * 214.97724 * 14 12 10 23 23 H 1.08998 * 117.50162 * 359.97438 * 14 12 10 24 24 H 1.08990 * 115.55270 * 148.95568 * 18 9 7 25 25 H 1.08996 * 117.49684 * 359.97438 * 19 18 9 26 26 H 1.09004 * 117.49743 * 145.02320 * 19 18 9 27 27 H 1.09002 * 117.49781 * 252.51701 * 20 19 18 28 28 H 1.08999 * 117.52174 * 107.48359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0479 -1.2272 0.2931 9 7 1.3754 -2.3606 -0.3736 10 6 0.5799 -2.3726 -1.4616 11 8 0.4242 -1.3596 -2.1103 12 6 -0.1170 -3.6444 -1.8715 13 1 0.4377 -4.5645 -1.6876 14 6 -1.6389 -3.6953 -1.7234 15 6 -1.0079 -3.5928 -3.1143 16 1 -1.0896 -2.6392 -3.6357 17 9 -1.0483 -4.7304 -3.9276 18 6 1.5629 -3.5839 0.4102 19 6 2.4164 -3.4877 1.6764 20 6 2.9641 -4.1978 0.4368 21 1 -0.4849 0.8367 0.0743 22 1 -2.0857 -4.6490 -1.4425 23 1 -2.1362 -2.8090 -1.3292 24 1 0.7138 -4.2670 0.4259 25 1 2.8385 -2.5143 1.9260 26 1 2.1286 -4.1076 2.5256 27 1 3.0367 -5.2849 0.4705 28 1 3.7462 -3.6918 -0.1291 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121047087.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:32 Heat of formation + Delta-G solvation = -18.681073 kcal Electronic energy + Delta-G solvation = -14427.931692 eV Core-core repulsion = 11781.796633 eV Total energy + Delta-G solvation = -2646.135059 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.23344 -38.78581 -36.47415 -34.77975 -32.73173 -30.88415 -25.75733 -22.95583 -21.90569 -21.67251 -21.07086 -19.03472 -17.23340 -16.10470 -15.60883 -15.05252 -14.59762 -14.32110 -13.98827 -13.65974 -13.15895 -12.93567 -12.21714 -11.90089 -11.46718 -11.09329 -10.93747 -10.91263 -10.73849 -10.22263 -10.00950 -9.85219 -9.77401 -9.54591 -8.75210 -8.11620 -7.07666 -6.15762 -3.91017 3.27096 3.37360 3.39279 3.64880 4.14211 4.32884 4.46167 4.73262 4.96327 5.19018 5.31850 5.37475 5.53063 5.59456 5.73583 5.76971 5.96956 6.14590 6.21428 6.38151 6.47628 6.58425 6.73551 6.91401 7.58774 8.23189 9.01359 9.10022 9.60847 10.23393 10.93502 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.012466 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.269300 B = 2245.481330 C = 2954.639806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.349 4.349 8 H 0.079 0.921 9 N -0.421 5.421 10 C 0.512 3.488 11 O -0.533 6.533 12 C -0.183 4.183 13 H 0.117 0.883 14 C -0.167 4.167 15 C 0.035 3.965 16 H 0.142 0.858 17 F -0.192 7.192 18 C 0.075 3.925 19 C -0.173 4.173 20 C -0.208 4.208 21 H 0.264 0.736 22 H 0.101 0.899 23 H 0.115 0.885 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -7.240 0.542 7.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.476 4.476 8 H 0.097 0.903 9 N -0.141 5.141 10 C 0.299 3.701 11 O -0.411 6.411 12 C -0.206 4.206 13 H 0.135 0.865 14 C -0.205 4.205 15 C -0.002 4.002 16 H 0.159 0.841 17 F -0.173 7.173 18 C -0.031 4.031 19 C -0.211 4.211 20 C -0.247 4.247 21 H 0.074 0.926 22 H 0.120 0.880 23 H 0.134 0.866 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.355 -6.595 0.116 6.606 hybrid contribution 0.377 0.510 0.180 0.659 sum 0.022 -6.085 0.296 6.092 Atomic orbital electron populations 1.69829 1.06589 1.27367 1.42873 1.25257 0.94876 0.99461 0.94170 0.86128 0.79824 0.82450 0.77519 1.19537 1.20598 1.21142 1.18921 0.94634 0.83767 1.50249 0.90302 1.42638 1.43727 1.06873 1.20854 1.18700 0.82883 0.86982 0.81540 1.90528 1.62927 1.34006 1.53665 1.23087 0.94238 1.01322 1.01918 0.86522 1.23569 0.94556 1.04479 0.97878 1.22104 1.05725 0.86877 0.85457 0.84054 1.92745 1.96858 1.53391 1.74283 1.21685 0.92598 0.91554 0.97285 1.23070 1.04415 1.02500 0.91073 1.23326 0.99748 0.98562 1.03111 0.92604 0.88040 0.86645 0.87859 0.87467 0.89753 0.89753 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.29 11.75 55.50 0.65 -23.64 15 2 C 0.07 2.03 4.38 -17.47 -0.08 1.96 15 3 Si 0.91 21.74 29.59 -169.99 -5.03 16.71 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.35 -9.48 7.92 -14.93 -0.12 -9.60 15 8 H 0.08 2.08 7.26 -52.49 -0.38 1.70 15 9 N -0.42 -10.53 2.83 -107.73 -0.31 -10.84 15 10 C 0.51 12.97 6.75 -10.98 -0.07 12.89 15 11 O -0.53 -15.54 14.02 5.55 0.08 -15.46 15 12 C -0.18 -3.65 4.93 -91.77 -0.45 -4.10 15 13 H 0.12 2.08 7.31 -51.93 -0.38 1.70 15 14 C -0.17 -2.89 10.22 -26.69 -0.27 -3.16 15 15 C 0.03 0.64 7.41 -26.69 -0.20 0.44 15 16 H 0.14 2.70 7.67 -51.93 -0.40 2.30 15 17 F -0.19 -3.42 17.60 2.25 0.04 -3.38 15 18 C 0.07 1.50 5.62 -67.93 -0.38 1.12 15 19 C -0.17 -3.11 9.80 -26.73 -0.26 -3.37 15 20 C -0.21 -3.57 10.36 -26.73 -0.28 -3.85 15 21 H 0.26 7.34 8.32 -40.82 -0.34 7.00 15 22 H 0.10 1.46 8.14 -51.93 -0.42 1.03 15 23 H 0.12 2.16 8.14 -51.93 -0.42 1.74 15 24 H 0.10 1.87 7.12 -51.93 -0.37 1.50 15 25 H 0.11 2.12 6.72 -51.93 -0.35 1.77 15 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 28 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 LS Contribution 249.61 15.07 3.76 3.76 Total: -1.00 -31.31 249.61 -6.04 -37.35 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.13 Total: 3.17 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.11 Total: -7.67 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.35 Total: -34.48 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.31 -6.04 -37.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047087.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.669 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds