Wall clock time and date at job start Sun Mar 29 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47398 * 300.00594 * 3 2 1 6 6 H 1.48508 * 109.47028 * 60.00263 * 3 2 1 7 7 C 1.38952 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99941 * 198.29623 * 7 2 1 9 9 N 1.37097 * 120.00479 * 18.28833 * 7 2 1 10 10 C 1.34786 * 119.99417 * 44.27293 * 9 7 2 11 11 O 1.21288 * 120.00098 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99796 * 180.02562 * 10 9 7 13 13 H 1.09001 * 115.54517 * 325.57958 * 12 10 9 14 14 C 1.52995 * 117.49841 * 111.25092 * 12 10 9 15 15 C 1.53002 * 117.49807 * 179.91260 * 12 10 9 16 16 H 1.08995 * 117.49710 * 0.02562 * 15 12 10 17 17 F 1.39898 * 117.49561 * 144.99770 * 15 12 10 18 18 C 1.46497 * 120.00707 * 224.27449 * 9 7 2 19 19 C 1.53004 * 117.49450 * 3.24662 * 18 9 7 20 20 C 1.53001 * 60.00018 * 252.51547 * 19 18 9 21 21 H 0.96994 * 119.99554 * 354.92465 * 1 2 3 22 22 H 1.09006 * 117.49915 * 214.97724 * 14 12 10 23 23 H 1.08998 * 117.50162 * 359.97438 * 14 12 10 24 24 H 1.08990 * 115.55270 * 148.95568 * 18 9 7 25 25 H 1.08996 * 117.49684 * 359.97438 * 19 18 9 26 26 H 1.09004 * 117.49743 * 145.02320 * 19 18 9 27 27 H 1.09002 * 117.49781 * 252.51701 * 20 19 18 28 28 H 1.08999 * 117.52174 * 107.48359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0479 -1.2272 0.2931 9 7 1.3754 -2.3606 -0.3736 10 6 0.5799 -2.3726 -1.4616 11 8 0.4242 -1.3596 -2.1103 12 6 -0.1170 -3.6444 -1.8715 13 1 0.4377 -4.5645 -1.6876 14 6 -1.6389 -3.6953 -1.7234 15 6 -1.0079 -3.5928 -3.1143 16 1 -1.0896 -2.6392 -3.6357 17 9 -1.0483 -4.7304 -3.9276 18 6 1.5629 -3.5839 0.4102 19 6 2.4164 -3.4877 1.6764 20 6 2.9641 -4.1978 0.4368 21 1 -0.4849 0.8367 0.0743 22 1 -2.0857 -4.6490 -1.4425 23 1 -2.1362 -2.8090 -1.3292 24 1 0.7138 -4.2670 0.4259 25 1 2.8385 -2.5143 1.9260 26 1 2.1286 -4.1076 2.5256 27 1 3.0367 -5.2849 0.4705 28 1 3.7462 -3.6918 -0.1291 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121047087.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:31 Heat of formation + Delta-G solvation = -37.898587 kcal Electronic energy + Delta-G solvation = -14428.765026 eV Core-core repulsion = 11781.796633 eV Total energy + Delta-G solvation = -2646.968393 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.66870 -40.57477 -38.07863 -36.43653 -34.68056 -32.80854 -27.70843 -24.70019 -23.34720 -23.06979 -22.70759 -20.84059 -18.91057 -17.89967 -17.29530 -16.64755 -16.43502 -15.88491 -15.52276 -15.44372 -14.89592 -14.57709 -13.88239 -13.41244 -13.25809 -12.90613 -12.79307 -12.71235 -12.25024 -12.07460 -11.67831 -11.40516 -11.26096 -11.03809 -10.73289 -10.04119 -9.00754 -8.22874 -6.01089 1.35272 1.43158 1.50810 1.98215 2.28160 2.72392 2.82945 3.10633 3.26223 3.43226 3.74502 3.84322 4.05360 4.12756 4.24791 4.30920 4.49232 4.68782 4.89738 4.93558 5.06033 5.15691 5.28307 5.45980 5.49640 6.18604 7.00395 7.14832 7.65806 8.30406 8.85982 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.012466 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.269300 B = 2245.481330 C = 2954.639806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.022 3.978 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.436 5.436 10 C 0.496 3.504 11 O -0.588 6.588 12 C -0.192 4.192 13 H 0.143 0.857 14 C -0.141 4.141 15 C 0.040 3.960 16 H 0.127 0.873 17 F -0.185 7.185 18 C 0.043 3.957 19 C -0.169 4.169 20 C -0.182 4.182 21 H 0.260 0.740 22 H 0.143 0.857 23 H 0.097 0.903 24 H 0.127 0.873 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -9.222 1.287 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.096 0.904 9 N -0.155 5.155 10 C 0.285 3.715 11 O -0.470 6.470 12 C -0.214 4.214 13 H 0.161 0.839 14 C -0.179 4.179 15 C 0.003 3.997 16 H 0.144 0.856 17 F -0.165 7.165 18 C -0.062 4.062 19 C -0.206 4.206 20 C -0.221 4.221 21 H 0.070 0.930 22 H 0.161 0.839 23 H 0.116 0.884 24 H 0.145 0.855 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.004 -8.615 0.897 8.662 hybrid contribution 0.324 1.051 -0.059 1.101 sum 0.328 -7.564 0.839 7.618 Atomic orbital electron populations 1.69925 1.07912 1.27646 1.44842 1.26061 0.95617 1.02590 0.94168 0.85249 0.79244 0.78763 0.77188 1.18282 1.22119 1.19656 1.19156 0.94894 0.85171 1.49469 0.90363 1.42879 1.43298 1.07918 1.21455 1.19563 0.82686 0.88192 0.81063 1.90480 1.64778 1.36449 1.55318 1.22942 0.95563 0.99467 1.03393 0.83902 1.23626 0.92353 1.05739 0.96156 1.21893 1.05520 0.86617 0.85656 0.85558 1.92762 1.96807 1.52855 1.74121 1.22025 0.95069 0.90493 0.98598 1.23127 1.03393 1.02154 0.91971 1.23341 0.96772 1.00576 1.01396 0.93035 0.83934 0.88432 0.85520 0.90028 0.86321 0.85660 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.00 11.75 21.66 0.25 -51.75 15 2 C 0.02 1.25 4.38 84.93 0.37 1.63 15 3 Si 0.97 45.48 29.59 68.60 2.03 47.51 15 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 15 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.36 -19.79 7.92 84.04 0.67 -19.12 15 8 H 0.08 4.18 7.26 -2.91 -0.02 4.16 15 9 N -0.44 -21.81 2.83 -613.12 -1.74 -23.55 15 10 C 0.50 25.30 6.75 87.66 0.59 25.89 15 11 O -0.59 -35.38 14.02 -3.06 -0.04 -35.42 15 12 C -0.19 -7.32 4.93 -11.54 -0.06 -7.38 15 13 H 0.14 4.64 7.31 -2.39 -0.02 4.62 15 14 C -0.14 -4.57 10.22 30.62 0.31 -4.26 15 15 C 0.04 1.40 7.41 30.62 0.23 1.63 15 16 H 0.13 4.90 7.67 -2.39 -0.02 4.88 15 17 F -0.19 -6.14 17.60 44.97 0.79 -5.35 15 18 C 0.04 1.63 5.62 44.99 0.25 1.88 15 19 C -0.17 -5.66 9.80 30.60 0.30 -5.36 15 20 C -0.18 -5.68 10.36 30.60 0.32 -5.37 15 21 H 0.26 14.97 8.32 -92.71 -0.77 14.20 15 22 H 0.14 3.46 8.14 -2.38 -0.02 3.44 15 23 H 0.10 3.57 8.14 -2.39 -0.02 3.56 15 24 H 0.13 4.17 7.12 -2.39 -0.02 4.15 15 25 H 0.08 3.17 6.72 -2.39 -0.02 3.15 15 26 H 0.12 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.13 2.92 8.14 -2.39 -0.02 2.90 15 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 Total: -1.00 -69.38 249.61 5.44 -63.94 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.16 Total: 15.05 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 2.98 Total: -10.44 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -1.48 Total: -75.29 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.04 Total: -35.42 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.79 Total: -5.35 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.38 5.44 -63.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121047087.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.046 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds