Wall clock time and date at job start Sun Mar 29 2020 22:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 110.63909 * 2 1 4 4 C 1.55155 * 110.71956 * 123.14131 * 2 1 3 5 5 C 1.54912 * 101.57968 * 154.04355 * 4 2 1 6 6 N 1.47426 * 104.83261 * 322.99067 * 5 4 2 7 7 C 1.34780 * 125.64645 * 203.86243 * 6 5 4 8 8 O 1.21289 * 119.99749 * 180.02562 * 7 6 5 9 9 C 1.50692 * 120.00414 * 0.02590 * 7 6 5 10 10 C 1.50692 * 109.47453 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00335 * 359.97438 * 10 9 7 12 12 C 1.37884 * 120.00112 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99854 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99885 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47019 * 90.00315 * 14 12 10 16 16 H 1.48499 * 109.46952 * 209.99913 * 14 12 10 17 17 H 1.48498 * 109.47188 * 330.00036 * 14 12 10 18 18 C 1.47024 * 108.70449 * 24.12870 * 6 5 4 19 19 H 1.08993 * 109.47270 * 298.30870 * 1 2 3 20 20 H 1.09000 * 109.47234 * 58.31093 * 1 2 3 21 21 H 1.09007 * 109.47030 * 178.31339 * 1 2 3 22 22 H 0.96692 * 113.99712 * 61.69071 * 3 2 1 23 23 H 1.08997 * 111.00368 * 35.97547 * 4 2 1 24 24 H 1.08989 * 111.00661 * 272.11676 * 4 2 1 25 25 H 1.09002 * 110.36496 * 204.15483 * 5 4 2 26 26 H 1.08997 * 110.36790 * 81.83118 * 5 4 2 27 27 H 1.08999 * 109.46911 * 300.00252 * 9 7 6 28 28 H 1.09007 * 109.47390 * 59.99552 * 9 7 6 29 29 H 0.97003 * 120.00090 * 179.97438 * 13 12 10 30 30 H 1.08995 * 109.88316 * 118.35549 * 18 6 5 31 31 H 1.09002 * 109.88101 * 239.52444 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 3.4652 -1.2446 0.6913 6 7 3.2494 -1.5470 -0.7354 7 6 4.0031 -2.3751 -1.4856 8 8 3.7320 -2.5495 -2.6548 9 6 5.1825 -3.0843 -0.8717 10 6 5.8506 -3.9431 -1.9141 11 1 5.4600 -3.9729 -2.9206 12 6 6.9607 -4.6911 -1.5831 13 7 7.5434 -5.4410 -2.4929 14 14 7.6359 -4.6402 0.1578 15 1 6.9870 -5.6995 0.9715 16 1 9.1028 -4.8689 0.1266 17 1 7.3546 -3.3120 0.7592 18 6 2.0798 -0.7905 -1.2060 19 1 -0.3633 0.4873 0.9047 20 1 -0.3634 0.5398 -0.8744 21 1 -0.3633 -1.0273 -0.0302 22 1 1.7803 1.8530 0.7777 23 1 1.4470 -1.6529 1.4382 24 1 2.1820 -0.1491 2.0881 25 1 3.7992 -2.1364 1.2217 26 1 4.1930 -0.4409 0.8029 27 1 5.8937 -2.3485 -0.4962 28 1 4.8409 -3.7121 -0.0486 29 1 8.3246 -5.9669 -2.2601 30 1 2.3775 -0.1015 -1.9963 31 1 1.3190 -1.4773 -1.5771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:22 Heat of formation + Delta-G solvation = -116.460895 kcal Electronic energy + Delta-G solvation = -14458.543260 eV Core-core repulsion = 11931.628455 eV Total energy + Delta-G solvation = -2526.914806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.16852 -39.28470 -36.34544 -35.06678 -32.81090 -31.56747 -30.61299 -27.81373 -25.10396 -23.83151 -21.47510 -20.29801 -19.12587 -17.96770 -17.45860 -16.94453 -16.64848 -16.05028 -15.56559 -15.16777 -14.58476 -14.20406 -14.07269 -13.86681 -13.60293 -13.32115 -12.98747 -12.83034 -12.55074 -12.41837 -12.27981 -11.89675 -11.67860 -11.56261 -10.90088 -10.81262 -10.65737 -9.66821 -8.29044 -6.38620 1.36888 1.42199 1.52862 1.74743 2.05575 2.36532 3.03350 3.11974 3.48449 3.59809 3.88159 4.12662 4.27434 4.38545 4.59650 4.61342 4.69531 4.71973 4.82051 4.94818 4.99885 5.04165 5.17532 5.27631 5.34189 5.49847 6.22058 6.51006 6.78592 6.94912 7.20724 7.35598 8.88751 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052514 B = 0.007615 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.061321 B = 3676.182533 C = 4012.635458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 O -0.569 6.569 4 C -0.143 4.143 5 C 0.089 3.911 6 N -0.628 5.628 7 C 0.529 3.471 8 O -0.590 6.590 9 C -0.015 4.015 10 C -0.540 4.540 11 H 0.026 0.974 12 C 0.002 3.998 13 N -0.952 5.952 14 Si 0.963 3.037 15 H -0.257 1.257 16 H -0.282 1.282 17 H -0.231 1.231 18 C 0.107 3.893 19 H 0.094 0.906 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.399 0.601 23 H 0.097 0.903 24 H 0.124 0.876 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.270 0.730 30 H 0.045 0.955 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 12.980 16.337 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.085 3.915 3 O -0.379 6.379 4 C -0.181 4.181 5 C -0.033 4.033 6 N -0.363 5.363 7 C 0.320 3.680 8 O -0.470 6.470 9 C -0.055 4.055 10 C -0.578 4.578 11 H 0.044 0.956 12 C -0.194 4.194 13 N -0.592 5.592 14 Si 0.783 3.217 15 H -0.182 1.182 16 H -0.208 1.208 17 H -0.154 1.154 18 C -0.015 4.015 19 H 0.112 0.888 20 H 0.079 0.921 21 H 0.091 0.909 22 H 0.250 0.750 23 H 0.116 0.884 24 H 0.142 0.858 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.121 12.534 15.073 23.589 hybrid contribution 0.424 -0.247 0.060 0.494 sum -12.698 12.286 15.133 23.263 Atomic orbital electron populations 1.22279 0.91928 1.03719 1.04059 1.22018 0.93960 0.82494 0.93075 1.86569 1.78090 1.23694 1.49519 1.23524 0.94546 1.01899 0.98131 1.22623 0.99658 1.01696 0.79285 1.48699 1.30019 1.44754 1.12847 1.21066 0.83615 0.77754 0.85523 1.90563 1.72050 1.65082 1.19322 1.19512 0.92196 0.96403 0.97360 1.21171 1.12954 1.26522 0.97162 0.95564 1.26178 0.96118 0.93689 1.03462 1.70095 1.22297 1.29742 1.37059 0.85513 0.77482 0.81016 0.77699 1.18165 1.20795 1.15408 1.21990 0.88156 0.93912 0.97478 0.88762 0.92056 0.90923 0.75019 0.88422 0.85759 0.89409 0.90762 0.91746 0.91351 0.92151 0.93622 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.85 71.98 0.64 -1.49 16 2 C 0.13 2.39 1.27 -9.60 -0.01 2.38 16 3 O -0.57 -10.79 13.09 -148.98 -1.95 -12.74 16 4 C -0.14 -2.18 6.25 31.99 0.20 -1.98 16 5 C 0.09 2.19 6.68 86.86 0.58 2.77 16 6 N -0.63 -22.73 3.33 -811.78 -2.70 -25.43 16 7 C 0.53 25.79 7.84 87.65 0.69 26.48 16 8 O -0.59 -34.93 15.79 -3.06 -0.05 -34.98 16 9 C -0.02 -0.74 3.54 29.10 0.10 -0.64 16 10 C -0.54 -34.00 9.48 25.60 0.24 -33.76 16 11 H 0.03 1.94 7.00 -2.91 -0.02 1.92 16 12 C 0.00 0.12 5.47 84.66 0.46 0.59 16 13 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 14 Si 0.96 42.81 27.47 68.60 1.88 44.70 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 18 C 0.11 3.34 6.23 86.73 0.54 3.88 16 19 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 20 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.07 0.95 8.10 -2.38 -0.02 0.93 16 22 H 0.40 3.18 9.10 -74.06 -0.67 2.50 16 23 H 0.10 1.32 8.05 -2.39 -0.02 1.30 16 24 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 2.02 7.49 -2.39 -0.02 2.00 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.91 7.20 -2.39 -0.02 2.89 16 28 H 0.07 2.97 7.28 -2.38 -0.02 2.95 16 29 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 30 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 31 H 0.07 2.28 7.80 -2.39 -0.02 2.26 16 Total: -1.00 -85.47 260.95 1.32 -84.15 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.39 Total: 8.09 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 3.44 Total: -1.77 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -2.40 Total: -87.45 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.00 Total: -47.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -85.47 1.32 -84.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.312 kcal (2) G-P(sol) polarization free energy of solvation -85.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds