Wall clock time and date at job start Sun Mar 29 2020 22:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 110.63754 * 2 1 4 4 C 1.55157 * 110.71883 * 236.66257 * 2 1 3 5 5 C 1.55133 * 101.48373 * 205.96878 * 4 2 1 6 6 N 1.47428 * 104.71939 * 37.29638 * 5 4 2 7 7 C 1.34782 * 125.64453 * 155.82311 * 6 5 4 8 8 O 1.21275 * 119.99644 * 179.69441 * 7 6 5 9 9 C 1.50703 * 119.99993 * 359.68249 * 7 6 5 10 10 C 1.50696 * 109.46995 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00012 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.31516 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00621 * 14 12 10 16 16 H 1.48503 * 109.47399 * 210.00111 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00717 * 14 12 10 18 18 C 1.47016 * 108.70488 * 335.55025 * 6 5 4 19 19 H 1.08999 * 109.47494 * 296.85627 * 1 2 3 20 20 H 1.08994 * 109.47051 * 56.86222 * 1 2 3 21 21 H 1.09002 * 109.46840 * 176.85876 * 1 2 3 22 22 H 0.96699 * 114.00234 * 303.14045 * 3 2 1 23 23 H 1.09003 * 111.00610 * 324.20582 * 4 2 1 24 24 H 1.09002 * 111.00496 * 88.02275 * 4 2 1 25 25 H 1.09005 * 110.49644 * 278.45516 * 5 4 2 26 26 H 1.08999 * 110.33963 * 156.06061 * 5 4 2 27 27 H 1.09008 * 109.46837 * 60.00530 * 9 7 6 28 28 H 1.08991 * 109.47467 * 300.00663 * 9 7 6 29 29 H 0.97000 * 119.99838 * 359.97438 * 13 12 10 30 30 H 1.09003 * 109.87734 * 120.70817 * 18 6 5 31 31 H 1.08997 * 109.88600 * 241.71330 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0790 -0.7975 -1.2124 5 6 3.4666 -1.2467 -0.6839 6 7 3.2445 -1.5494 0.7417 7 6 3.9924 -2.3809 1.4939 8 8 3.7194 -2.5514 2.6632 9 6 5.1675 -3.0990 0.8819 10 6 5.8295 -3.9601 1.9265 11 1 5.4382 -3.9852 2.9328 12 6 6.9349 -4.7158 1.5976 13 7 7.4117 -4.6847 0.3723 14 14 7.7550 -5.7837 2.8923 15 1 7.1378 -7.1344 2.8833 16 1 9.2048 -5.9001 2.5922 17 1 7.5745 -5.1659 4.2305 18 6 2.0760 -0.7891 1.2086 19 1 -0.3634 0.4642 0.9168 20 1 -0.3633 0.5617 -0.8605 21 1 -0.3633 -1.0262 -0.0563 22 1 1.7204 1.8756 -0.7397 23 1 1.4452 -1.6561 -1.4346 24 1 2.1844 -0.1556 -2.0870 25 1 4.1948 -0.4428 -0.7921 26 1 3.8031 -2.1382 -1.2131 27 1 5.8838 -2.3685 0.5055 28 1 4.8223 -3.7261 0.0601 29 1 6.9856 -4.1304 -0.3000 30 1 1.3130 -1.4731 1.5801 31 1 2.3735 -0.1009 1.9998 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:24 Heat of formation + Delta-G solvation = -95.334468 kcal Electronic energy + Delta-G solvation = -14437.387392 eV Core-core repulsion = 11911.388697 eV Total energy + Delta-G solvation = -2525.998695 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82988 -37.79892 -35.12753 -33.26290 -31.57791 -29.55545 -28.76653 -26.24147 -23.41348 -22.59521 -20.55984 -18.93268 -17.02231 -16.48045 -16.20103 -15.85361 -14.75738 -14.43660 -13.93048 -13.61559 -13.33162 -12.91753 -12.75306 -12.33068 -12.26155 -11.93403 -11.67847 -11.43736 -11.21082 -10.80211 -10.63655 -10.55978 -10.06439 -10.03712 -8.89304 -8.57158 -8.36361 -8.14071 -6.36769 -4.05213 3.48157 3.52662 3.54137 3.59900 3.71475 3.98963 4.36592 4.55008 4.59183 4.70093 5.15375 5.25298 5.37067 5.40323 5.56712 5.69235 5.76270 5.79871 5.91640 5.92183 6.03542 6.15243 6.74685 6.90061 7.07124 7.49856 7.90299 8.24330 8.58661 8.90537 9.12215 9.64787 11.03303 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.065868 B = 0.006763 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.988011 B = 4139.468297 C = 4367.784775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 O -0.549 6.549 4 C -0.158 4.158 5 C 0.108 3.892 6 N -0.634 5.634 7 C 0.536 3.464 8 O -0.539 6.539 9 C -0.001 4.001 10 C -0.589 4.589 11 H 0.069 0.931 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 1.078 2.922 15 H -0.287 1.287 16 H -0.284 1.284 17 H -0.287 1.287 18 C 0.121 3.879 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.375 0.625 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.074 0.926 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.597 9.687 -6.126 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.073 3.927 3 O -0.355 6.355 4 C -0.196 4.196 5 C -0.015 4.015 6 N -0.372 5.372 7 C 0.328 3.672 8 O -0.414 6.414 9 C -0.040 4.040 10 C -0.628 4.628 11 H 0.088 0.912 12 C -0.189 4.189 13 N -0.552 5.552 14 Si 0.906 3.094 15 H -0.214 1.214 16 H -0.210 1.210 17 H -0.213 1.213 18 C -0.003 4.003 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.222 0.778 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.127 8.243 -4.607 14.594 hybrid contribution -1.638 1.394 -0.976 2.362 sum -12.765 9.637 -5.583 16.941 Atomic orbital electron populations 1.22335 0.94399 1.03176 1.02751 1.22163 0.92521 0.82749 0.95258 1.86622 1.73957 1.22608 1.52308 1.23517 0.97449 1.00911 0.97735 1.22197 0.96407 1.00878 0.82028 1.48806 1.30695 1.46423 1.11240 1.21466 0.83098 0.76702 0.85930 1.90547 1.70525 1.63335 1.16979 1.19324 0.90663 0.95740 0.98281 1.22026 1.15011 1.27732 0.98002 0.91230 1.25929 0.94996 0.97725 1.00211 1.70802 1.42031 1.39660 1.02731 0.83415 0.76024 0.75599 0.74406 1.21391 1.21024 1.21265 1.21710 0.89253 0.93925 0.95382 0.91466 0.91895 0.91093 0.77782 0.89742 0.89752 0.91477 0.90293 0.94476 0.94531 0.92450 0.90744 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.80 37.16 0.33 -1.14 16 2 C 0.11 1.34 1.27 -88.78 -0.11 1.22 16 3 O -0.55 -6.40 13.11 -35.23 -0.46 -6.86 16 4 C -0.16 -1.73 6.28 -24.46 -0.15 -1.88 16 5 C 0.11 1.65 6.70 -2.41 -0.02 1.63 16 6 N -0.63 -12.30 3.32 -170.38 -0.57 -12.87 16 7 C 0.54 13.29 7.84 -10.98 -0.09 13.21 16 8 O -0.54 -15.15 15.79 5.56 0.09 -15.07 16 9 C 0.00 -0.02 3.77 -29.04 -0.11 -0.13 16 10 C -0.59 -17.88 8.92 -34.44 -0.31 -18.18 16 11 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 12 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 13 N -0.92 -28.03 13.65 55.43 0.76 -27.27 16 14 Si 1.08 26.44 29.90 -169.99 -5.08 21.36 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.12 1.97 6.23 -3.07 -0.02 1.95 16 19 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.07 0.61 8.10 -51.93 -0.42 0.18 16 22 H 0.37 2.52 9.07 45.56 0.41 2.93 16 23 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.20 7.48 -51.93 -0.39 0.82 16 27 H 0.04 0.99 8.01 -51.92 -0.42 0.57 16 28 H 0.04 0.96 7.72 -51.93 -0.40 0.56 16 29 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 30 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 31 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 LS Contribution 263.21 15.07 3.97 3.97 Total: -1.00 -35.81 263.21 -5.47 -41.28 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.59 Total: -1.52 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.57 Total: -3.01 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.19 Total: -40.14 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.37 Total: -21.93 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.08 Total: 21.36 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.81 -5.47 -41.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.057 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds