Wall clock time and date at job start Sun Mar 29 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34771 * 120.00081 * 2 1 4 4 O 1.21280 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.50709 * 119.99748 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.46850 * 179.97438 * 5 3 2 7 7 H 1.08005 * 119.99886 * 0.02562 * 6 5 3 8 8 C 1.37875 * 119.99878 * 180.02562 * 6 5 3 9 9 N 1.31514 * 119.99999 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99858 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46991 * 90.00787 * 10 8 6 12 12 H 1.48501 * 109.47205 * 210.00150 * 10 8 6 13 13 H 1.48496 * 109.47433 * 330.00305 * 10 8 6 14 14 C 1.46506 * 120.00105 * 179.97438 * 2 1 3 15 15 C 1.52994 * 113.56806 * 225.73006 * 14 2 1 16 16 C 1.53367 * 114.56338 * 0.02562 * 14 2 1 17 17 O 1.43348 * 88.49370 * 86.62649 * 16 14 2 18 18 C 1.43342 * 88.32461 * 28.12684 * 17 16 14 19 19 H 1.08994 * 109.47697 * 269.99973 * 1 2 3 20 20 H 1.09000 * 109.46950 * 30.00514 * 1 2 3 21 21 H 1.09005 * 109.46769 * 150.00259 * 1 2 3 22 22 H 1.08992 * 109.47208 * 300.00012 * 5 3 2 23 23 H 1.08995 * 109.47043 * 60.00233 * 5 3 2 24 24 H 0.97006 * 120.00347 * 179.97438 * 9 8 6 25 25 H 1.08996 * 109.47552 * 184.60998 * 15 14 2 26 26 H 1.09002 * 109.47251 * 304.61242 * 15 14 2 27 27 H 1.08996 * 109.47169 * 64.60595 * 15 14 2 28 28 H 1.09002 * 113.39529 * 331.70561 * 16 14 2 29 29 H 1.09005 * 113.38849 * 201.54853 * 16 14 2 30 30 H 1.09005 * 113.39677 * 86.74628 * 18 17 16 31 31 H 1.08999 * 113.39618 * 216.90341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6177 0.0002 7 1 3.4265 3.4203 0.0006 8 6 1.9050 4.9176 0.0004 9 7 2.7596 5.9173 0.0005 10 14 0.0685 5.2589 -0.0011 11 1 -0.4193 5.3489 1.3987 12 1 -0.1961 6.5417 -0.7008 13 1 -0.6392 4.1576 -0.7021 14 6 2.1975 -1.2688 0.0006 15 6 3.3511 -1.3086 1.0047 16 6 1.3083 -2.5184 0.0005 17 8 1.2620 -2.4391 -1.4300 18 6 2.5467 -1.8043 -1.3945 19 1 -0.3634 0.0000 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8901 -0.5138 22 1 0.7590 2.5298 -0.8908 23 1 0.7583 2.5302 0.8891 24 1 2.4363 6.8319 0.0003 25 1 3.8982 -2.2447 0.8927 26 1 4.0232 -0.4706 0.8196 27 1 2.9540 -1.2388 2.0173 28 1 0.3395 -2.3602 0.4743 29 1 1.8155 -3.4104 0.3684 30 1 3.3780 -2.5094 -1.3909 31 1 2.6634 -1.0210 -2.1434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:24 Heat of formation + Delta-G solvation = -33.412209 kcal Electronic energy + Delta-G solvation = -14797.972395 eV Core-core repulsion = 12274.658850 eV Total energy + Delta-G solvation = -2523.313544 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.28181 -38.46131 -34.55571 -32.96001 -31.61371 -29.31481 -27.00967 -25.87442 -25.46641 -23.56230 -20.41651 -17.88670 -17.04098 -16.63807 -16.07061 -15.88410 -15.12932 -14.73288 -14.65279 -14.00247 -13.08519 -12.97023 -12.68570 -12.59930 -12.21961 -12.12181 -11.63225 -11.48968 -10.88849 -10.81510 -10.64400 -10.43518 -10.05800 -9.93117 -9.25295 -8.62711 -8.58847 -8.23251 -6.04821 -4.04641 3.24402 3.26120 3.31096 3.34492 3.43397 3.89280 4.20797 4.39163 5.02468 5.09851 5.20113 5.24815 5.29837 5.44477 5.64979 5.69685 5.77103 5.84224 5.91805 5.95948 5.99746 6.03243 6.49213 6.63352 6.88886 7.00911 7.50480 7.94355 8.52676 9.02202 9.14948 9.53463 11.08110 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049417 B = 0.008589 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.468447 B = 3259.358380 C = 3580.676186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.527 3.473 4 O -0.523 6.523 5 C -0.025 4.025 6 C -0.513 4.513 7 H 0.093 0.907 8 C 0.069 3.931 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.113 3.887 15 C -0.163 4.163 16 C 0.024 3.976 17 O -0.368 6.368 18 C 0.021 3.979 19 H 0.051 0.949 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.264 0.736 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 -15.480 0.954 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C 0.318 3.682 4 O -0.397 6.397 5 C -0.065 4.065 6 C -0.551 4.551 7 H 0.111 0.889 8 C -0.132 4.132 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.026 3.974 15 C -0.221 4.221 16 C -0.053 4.053 17 O -0.286 6.286 18 C -0.058 4.058 19 H 0.069 0.931 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.181 -15.318 0.739 16.188 hybrid contribution -1.066 0.283 0.087 1.106 sum -6.247 -15.035 0.826 16.303 Atomic orbital electron populations 1.21803 0.79797 1.03568 1.01377 1.47779 1.06442 1.04166 1.76237 1.21478 0.88445 0.84714 0.73530 1.90487 1.14541 1.86667 1.48005 1.19709 0.97652 0.90755 0.98385 1.21006 0.95249 0.88112 1.50776 0.88946 1.24969 0.97431 0.96083 0.94767 1.69893 1.34026 0.98972 1.50620 0.86900 0.86354 0.78124 0.78583 1.20108 1.21072 1.19110 1.22421 0.93595 0.85366 0.96008 1.22119 0.98136 1.04045 0.97771 1.24118 1.01001 0.96830 0.83346 1.89822 1.35056 1.82103 1.21617 1.24258 0.86699 0.96223 0.98583 0.93062 0.90408 0.90972 0.93574 0.94020 0.92575 0.92123 0.87927 0.92298 0.89108 0.89349 0.89635 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 9.36 59.85 0.56 1.64 16 2 N -0.61 -10.55 3.04 -167.57 -0.51 -11.06 16 3 C 0.53 11.63 7.45 -10.98 -0.08 11.55 16 4 O -0.52 -13.07 12.88 5.56 0.07 -13.00 16 5 C -0.03 -0.60 3.08 -29.03 -0.09 -0.69 16 6 C -0.51 -14.99 9.48 -34.44 -0.33 -15.32 16 7 H 0.09 3.05 7.00 -52.48 -0.37 2.68 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 10 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 14 C 0.11 1.67 1.49 -131.39 -0.20 1.47 16 15 C -0.16 -2.34 9.00 37.15 0.33 -2.01 16 16 C 0.02 0.29 7.25 24.59 0.18 0.46 16 17 O -0.37 -5.28 12.05 -35.23 -0.42 -5.70 16 18 C 0.02 0.29 8.17 24.64 0.20 0.49 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.08 1.12 6.44 -51.93 -0.33 0.78 16 21 H 0.07 0.89 5.87 -51.93 -0.30 0.58 16 22 H 0.05 1.05 6.46 -51.93 -0.34 0.72 16 23 H 0.04 0.93 7.53 -51.93 -0.39 0.54 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 26 H 0.10 1.86 5.54 -51.93 -0.29 1.57 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.94 6.55 -51.93 -0.34 0.60 16 29 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 253.24 15.07 3.82 3.82 Total: -1.00 -33.15 253.24 -4.51 -37.66 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.05 Total: -0.38 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 0.48 Total: -0.49 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.26 Total: -38.10 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.35 Total: -18.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.15 -4.51 -37.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.250 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds