Wall clock time and date at job start Sun Mar 29 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34771 * 120.00081 * 2 1 4 4 O 1.21280 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.50709 * 119.99748 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.46850 * 179.97438 * 5 3 2 7 7 H 1.08005 * 119.99886 * 0.02562 * 6 5 3 8 8 C 1.37875 * 119.99878 * 180.02562 * 6 5 3 9 9 N 1.31514 * 119.99999 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99858 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46991 * 90.00787 * 10 8 6 12 12 H 1.48501 * 109.47205 * 210.00150 * 10 8 6 13 13 H 1.48496 * 109.47433 * 330.00305 * 10 8 6 14 14 C 1.46506 * 120.00105 * 179.97438 * 2 1 3 15 15 C 1.52994 * 113.56806 * 225.73006 * 14 2 1 16 16 C 1.53367 * 114.56338 * 0.02562 * 14 2 1 17 17 O 1.43348 * 88.49370 * 86.62649 * 16 14 2 18 18 C 1.43342 * 88.32461 * 28.12684 * 17 16 14 19 19 H 1.08994 * 109.47697 * 269.99973 * 1 2 3 20 20 H 1.09000 * 109.46950 * 30.00514 * 1 2 3 21 21 H 1.09005 * 109.46769 * 150.00259 * 1 2 3 22 22 H 1.08992 * 109.47208 * 300.00012 * 5 3 2 23 23 H 1.08995 * 109.47043 * 60.00233 * 5 3 2 24 24 H 0.97006 * 120.00347 * 179.97438 * 9 8 6 25 25 H 1.08996 * 109.47552 * 184.60998 * 15 14 2 26 26 H 1.09002 * 109.47251 * 304.61242 * 15 14 2 27 27 H 1.08996 * 109.47169 * 64.60595 * 15 14 2 28 28 H 1.09002 * 113.39529 * 331.70561 * 16 14 2 29 29 H 1.09005 * 113.38849 * 201.54853 * 16 14 2 30 30 H 1.09005 * 113.39677 * 86.74628 * 18 17 16 31 31 H 1.08999 * 113.39618 * 216.90341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6177 0.0002 7 1 3.4265 3.4203 0.0006 8 6 1.9050 4.9176 0.0004 9 7 2.7596 5.9173 0.0005 10 14 0.0685 5.2589 -0.0011 11 1 -0.4193 5.3489 1.3987 12 1 -0.1961 6.5417 -0.7008 13 1 -0.6392 4.1576 -0.7021 14 6 2.1975 -1.2688 0.0006 15 6 3.3511 -1.3086 1.0047 16 6 1.3083 -2.5184 0.0005 17 8 1.2620 -2.4391 -1.4300 18 6 2.5467 -1.8043 -1.3945 19 1 -0.3634 0.0000 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8901 -0.5138 22 1 0.7590 2.5298 -0.8908 23 1 0.7583 2.5302 0.8891 24 1 2.4363 6.8319 0.0003 25 1 3.8982 -2.2447 0.8927 26 1 4.0232 -0.4706 0.8196 27 1 2.9540 -1.2388 2.0173 28 1 0.3395 -2.3602 0.4743 29 1 1.8155 -3.4104 0.3684 30 1 3.3780 -2.5094 -1.3909 31 1 2.6634 -1.0210 -2.1434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:24 Heat of formation + Delta-G solvation = -58.909332 kcal Electronic energy + Delta-G solvation = -14799.078033 eV Core-core repulsion = 12274.658850 eV Total energy + Delta-G solvation = -2524.419183 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.42121 -40.02887 -35.99090 -35.07553 -32.97748 -31.18484 -28.14398 -27.01475 -26.54456 -25.51151 -21.89256 -19.37907 -18.99791 -17.81130 -17.48559 -17.09506 -16.43557 -16.41255 -16.14582 -15.58611 -14.80899 -14.26411 -14.08217 -13.79061 -13.71337 -13.56273 -13.07030 -12.77781 -12.69643 -12.41207 -12.00032 -11.88963 -11.58892 -11.49041 -11.06172 -10.79746 -10.24968 -9.58071 -8.27472 -6.35966 1.37770 1.41977 1.52237 1.76903 1.96541 2.36979 2.85912 3.04754 3.11568 3.94275 4.04632 4.14115 4.29670 4.32388 4.51410 4.58449 4.65283 4.67978 4.71729 4.84638 4.86778 4.95666 4.99275 5.04233 5.33003 5.48029 5.74775 6.20678 6.48457 6.80701 7.24280 7.42669 8.89955 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049417 B = 0.008589 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.468447 B = 3259.358380 C = 3580.676186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.520 3.480 4 O -0.568 6.568 5 C -0.022 4.022 6 C -0.533 4.533 7 H 0.030 0.970 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.958 3.042 11 H -0.260 1.260 12 H -0.285 1.285 13 H -0.232 1.232 14 C 0.090 3.910 15 C -0.157 4.157 16 C 0.041 3.959 17 O -0.382 6.382 18 C 0.022 3.978 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.268 0.732 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -17.732 1.387 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.336 5.336 3 C 0.311 3.689 4 O -0.447 6.447 5 C -0.062 4.062 6 C -0.571 4.571 7 H 0.049 0.951 8 C -0.194 4.194 9 N -0.593 5.593 10 Si 0.779 3.221 11 H -0.184 1.184 12 H -0.211 1.211 13 H -0.154 1.154 14 C 0.004 3.996 15 C -0.215 4.215 16 C -0.036 4.036 17 O -0.301 6.301 18 C -0.056 4.056 19 H 0.095 0.905 20 H 0.093 0.907 21 H 0.111 0.889 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.401 -17.636 1.173 19.570 hybrid contribution 0.034 0.929 -0.045 0.931 sum -8.367 -16.707 1.128 18.719 Atomic orbital electron populations 1.22101 0.77384 1.04511 1.03321 1.47684 1.07980 1.03793 1.74176 1.21211 0.87850 0.85914 0.73927 1.90494 1.16313 1.87526 1.50329 1.19588 0.96738 0.89907 0.99918 1.21177 0.93800 0.90847 1.51324 0.95137 1.26122 1.04333 0.95278 0.93702 1.70090 1.37403 0.99729 1.52048 0.85577 0.78053 0.78775 0.79704 1.18449 1.21082 1.15423 1.22780 0.94798 0.85442 0.96613 1.22026 0.97599 1.03926 0.97955 1.24261 1.01551 0.95764 0.81982 1.89816 1.34877 1.82026 1.23388 1.24293 0.87814 0.96286 0.97250 0.90517 0.90710 0.88890 0.91839 0.91677 0.92296 0.88710 0.92345 0.91869 0.87173 0.85975 0.86890 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 9.36 127.77 1.20 2.84 16 2 N -0.60 -19.83 3.04 -804.36 -2.45 -22.27 16 3 C 0.52 23.21 7.45 87.66 0.65 23.86 16 4 O -0.57 -30.02 12.88 -3.03 -0.04 -30.06 16 5 C -0.02 -1.03 3.08 29.11 0.09 -0.94 16 6 C -0.53 -32.39 9.48 25.60 0.24 -32.15 16 7 H 0.03 2.17 7.00 -2.91 -0.02 2.15 16 8 C 0.00 0.12 5.47 84.65 0.46 0.59 16 9 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 10 Si 0.96 42.35 27.47 68.60 1.88 44.23 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 12 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.23 -8.87 6.54 99.48 0.65 -8.22 16 14 C 0.09 2.46 1.49 3.88 0.01 2.46 16 15 C -0.16 -4.32 9.00 71.98 0.65 -3.67 16 16 C 0.04 0.77 7.25 63.84 0.46 1.24 16 17 O -0.38 -9.70 12.05 -148.98 -1.80 -11.49 16 18 C 0.02 0.58 8.17 63.87 0.52 1.10 16 19 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.07 1.87 6.44 -2.39 -0.02 1.85 16 21 H 0.09 1.88 5.87 -2.38 -0.01 1.86 16 22 H 0.06 2.75 6.46 -2.39 -0.02 2.73 16 23 H 0.07 2.74 7.53 -2.39 -0.02 2.72 16 24 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 25 H 0.09 1.88 8.06 -2.39 -0.02 1.86 16 26 H 0.06 2.18 5.54 -2.39 -0.01 2.17 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.11 1.69 6.55 -2.39 -0.02 1.67 16 29 H 0.12 1.56 8.11 -2.38 -0.02 1.54 16 30 H 0.11 2.35 8.05 -2.38 -0.02 2.34 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -77.69 253.24 3.25 -74.44 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.07 Total: 10.95 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.28 Total: -4.67 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -2.15 Total: -83.40 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.83 Total: -41.55 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -77.69 3.25 -74.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.527 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds