Wall clock time and date at job start Sun Mar 29 2020 22:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48494 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46928 * 300.00572 * 3 2 1 6 6 H 1.48505 * 109.46854 * 60.00390 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47192 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00109 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00137 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99873 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46684 * 180.02562 * 13 12 10 15 15 H 1.09001 * 110.45942 * 54.30182 * 14 13 12 16 16 C 1.54514 * 110.50920 * 176.90455 * 14 13 12 17 17 C 1.54479 * 104.06171 * 118.64556 * 16 14 13 18 18 O 1.44420 * 104.80278 * 23.98064 * 17 16 14 19 19 C 1.44639 * 105.37088 * 319.56346 * 18 17 16 20 20 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 22 22 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 23 23 H 0.96995 * 120.00018 * 0.27749 * 12 10 9 24 24 H 1.09000 * 109.47212 * 300.00355 * 13 12 10 25 25 H 1.09001 * 109.46577 * 60.00430 * 13 12 10 26 26 H 1.08996 * 110.51303 * 237.29138 * 16 14 13 27 27 H 1.09005 * 110.51105 * 0.02562 * 16 14 13 28 28 H 1.09007 * 110.37103 * 142.81139 * 17 16 14 29 29 H 1.08997 * 110.37253 * 265.03422 * 17 16 14 30 30 H 1.09000 * 110.34135 * 281.59274 * 19 18 17 31 31 H 1.09006 * 110.51208 * 159.18714 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4227 -3.4231 -0.0010 12 7 1.7809 -4.9153 0.0000 13 6 2.7330 -6.0289 -0.0006 14 6 1.9679 -7.3538 -0.0005 15 1 1.2609 -7.3856 -0.8295 16 6 2.9485 -8.5452 -0.0792 17 6 2.6947 -9.3274 1.2286 18 8 1.3499 -8.9713 1.6164 19 6 1.2346 -7.5554 1.3442 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 0.8273 -5.0925 -0.0037 24 1 3.3590 -5.9712 -0.8910 25 1 3.3602 -5.9710 0.8890 26 1 2.7249 -9.1674 -0.9458 27 1 3.9785 -8.1903 -0.1178 28 1 2.7664 -10.4002 1.0491 29 1 3.4060 -9.0235 1.9966 30 1 1.7193 -6.9776 2.1311 31 1 0.1871 -7.2683 1.2519 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202258.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:53 Heat of formation + Delta-G solvation = -124.185276 kcal Electronic energy + Delta-G solvation = -13945.834022 eV Core-core repulsion = 11418.584262 eV Total energy + Delta-G solvation = -2527.249760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83481 -39.93956 -36.13232 -35.09155 -33.20518 -31.12980 -30.04025 -26.96765 -25.16605 -23.60100 -21.73306 -21.05060 -18.55233 -17.85428 -17.55640 -16.80106 -16.53592 -16.52573 -15.92504 -15.84229 -14.87372 -14.47486 -14.18021 -13.91372 -13.47364 -13.11059 -12.85792 -12.63871 -12.57207 -12.22716 -12.05216 -11.96414 -11.58136 -11.43174 -10.78404 -10.63022 -10.53659 -10.00155 -8.25541 -6.32641 1.39845 1.40681 1.55545 1.88345 2.32499 2.50843 3.00214 3.09975 3.59091 3.74419 3.86632 4.18268 4.30423 4.33438 4.42057 4.61367 4.75205 4.80835 4.85426 4.92538 5.06530 5.10028 5.16687 5.27054 5.55817 5.73935 5.81490 6.05881 6.70296 6.84046 7.33788 7.50929 8.86801 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076489 B = 0.005368 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.979663 B = 5214.564908 C = 5418.859838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.006 3.994 10 C 0.518 3.482 11 O -0.587 6.587 12 N -0.727 5.727 13 C 0.130 3.870 14 C -0.124 4.124 15 H 0.102 0.898 16 C -0.144 4.144 17 C 0.038 3.962 18 O -0.398 6.398 19 C 0.045 3.955 20 H 0.267 0.733 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.411 0.589 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -17.183 0.270 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.072 0.928 9 C -0.033 4.033 10 C 0.307 3.693 11 O -0.467 6.467 12 N -0.381 5.381 13 C 0.007 3.993 14 C -0.143 4.143 15 H 0.120 0.880 16 C -0.182 4.182 17 C -0.038 4.038 18 O -0.317 6.317 19 C -0.031 4.031 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.247 0.753 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.353 -17.074 0.364 17.239 hybrid contribution 0.024 1.075 -0.047 1.076 sum 2.377 -15.999 0.317 16.178 Atomic orbital electron populations 1.70036 1.07122 1.28033 1.51272 1.25790 0.95847 1.02749 0.94487 0.85405 0.78588 0.78867 0.78230 1.20001 1.19731 1.19753 1.21413 0.93677 0.91360 1.51081 0.92757 1.19096 0.94336 0.90963 0.98946 1.21457 0.89795 0.84758 0.73305 1.90514 1.19278 1.85596 1.51269 1.46028 1.10928 1.04847 1.76280 1.21392 0.91849 0.84573 1.01503 1.22728 0.98484 0.93436 0.99662 0.87973 1.22952 1.00105 0.95623 0.99485 1.23610 0.83604 1.01382 0.95201 1.89123 1.31928 1.24218 1.86435 1.23632 1.02199 0.82194 0.95098 0.92388 0.93861 0.93883 0.75279 0.92135 0.92669 0.88707 0.89426 0.87266 0.91971 0.92577 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 13.29 21.45 0.28 -53.83 16 2 C 0.01 0.56 5.46 84.66 0.46 1.03 16 3 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -31.82 8.92 25.60 0.23 -31.60 16 8 H 0.05 3.40 6.75 -2.91 -0.02 3.38 16 9 C 0.01 0.31 5.46 29.10 0.16 0.47 16 10 C 0.52 23.57 7.82 87.66 0.69 24.26 16 11 O -0.59 -31.17 15.46 -3.04 -0.05 -31.21 16 12 N -0.73 -23.57 5.42 -463.05 -2.51 -26.08 16 13 C 0.13 3.48 4.82 86.38 0.42 3.90 16 14 C -0.12 -2.37 3.16 -9.78 -0.03 -2.41 16 15 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.14 -2.20 6.74 31.61 0.21 -1.99 16 17 C 0.04 0.63 7.64 72.49 0.55 1.18 16 18 O -0.40 -8.90 11.65 -148.98 -1.74 -10.64 16 19 C 0.05 0.93 6.98 72.48 0.51 1.44 16 20 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 21 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 22 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.41 10.90 8.39 -92.71 -0.78 10.12 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.59 8.02 -2.39 -0.02 1.57 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.27 7.73 -2.38 -0.02 1.26 16 28 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.26 7.78 -2.39 -0.02 1.24 16 31 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -70.46 265.78 1.55 -68.90 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.34 Total: 9.15 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 3.19 Total: -3.72 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.22 Total: -79.91 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.78 Total: -41.85 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.46 1.55 -68.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202258.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.283 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds