Wall clock time and date at job start Sun Mar 29 2020 22:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00057 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00015 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99823 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46732 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.43560 * 303.90784 * 14 13 12 16 16 C 1.54811 * 110.48151 * 181.21914 * 14 13 12 17 17 C 1.55004 * 102.08850 * 220.43936 * 16 14 13 18 18 O 1.44382 * 103.48894 * 37.02765 * 17 16 14 19 19 C 1.43744 * 106.97463 * 319.93786 * 18 17 16 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 0.97001 * 119.99466 * 359.97438 * 12 10 9 24 24 H 1.08995 * 109.46839 * 299.99764 * 13 12 10 25 25 H 1.09001 * 109.47305 * 59.99893 * 13 12 10 26 26 H 1.08995 * 110.91449 * 338.64108 * 16 14 13 27 27 H 1.09009 * 110.90533 * 102.25171 * 16 14 13 28 28 H 1.08995 * 110.61679 * 278.52287 * 17 16 14 29 29 H 1.08995 * 110.61289 * 155.52751 * 17 16 14 30 30 H 1.08998 * 109.87823 * 267.09183 * 19 18 17 31 31 H 1.09001 * 110.00334 * 146.00617 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2305 -3.6445 0.0182 11 8 3.4229 -3.4228 0.0166 12 7 1.7813 -4.9152 0.0242 13 6 2.7334 -6.0286 0.0305 14 6 1.9684 -7.3537 0.0372 15 1 1.2843 -7.3939 0.8848 16 6 2.9532 -8.5476 0.0748 17 6 2.2884 -9.5477 -0.9053 18 8 1.7470 -8.6971 -1.9387 19 6 1.1999 -7.5394 -1.2855 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 0.8276 -5.0924 0.0251 24 1 3.3607 -5.9753 -0.8593 25 1 3.3594 -5.9664 0.9206 26 1 3.9391 -8.2501 -0.2823 27 1 3.0152 -8.9692 1.0781 28 1 1.4923 -10.1012 -0.4074 29 1 3.0307 -10.2299 -1.3194 30 1 0.1409 -7.6957 -1.0800 31 1 1.3291 -6.6597 -1.9159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202259.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:56 Heat of formation + Delta-G solvation = -102.390452 kcal Electronic energy + Delta-G solvation = -13982.501558 eV Core-core repulsion = 11456.196893 eV Total energy + Delta-G solvation = -2526.304665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.82062 -38.52263 -34.84392 -33.25698 -32.09666 -29.66640 -28.43644 -25.55484 -23.31049 -22.52722 -20.71277 -19.77500 -17.06654 -16.76270 -16.37250 -15.72081 -15.31270 -15.02810 -14.67839 -13.71469 -13.42192 -13.22014 -12.88157 -12.47573 -12.18973 -11.78197 -11.44334 -11.41301 -11.06695 -10.91854 -10.68691 -10.57370 -10.05224 -9.84903 -8.93024 -8.59054 -8.58670 -8.36780 -6.38182 -4.06935 3.47942 3.51930 3.60188 3.68247 3.73087 3.74384 4.34392 4.54206 4.58949 4.66140 4.94636 5.02063 5.20214 5.38741 5.44555 5.46953 5.50689 5.69839 5.74106 5.83466 5.98801 6.22754 6.65239 6.79128 6.95169 7.04034 7.86494 8.25526 8.56969 8.88777 9.12112 9.63081 11.01917 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077103 B = 0.005394 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.065055 B = 5189.806372 C = 5369.955114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.589 4.589 8 H 0.069 0.931 9 C -0.009 4.009 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.751 5.751 13 C 0.130 3.870 14 C -0.135 4.135 15 H 0.089 0.911 16 C -0.147 4.147 17 C 0.046 3.954 18 O -0.378 6.378 19 C 0.048 3.952 20 H 0.266 0.734 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.394 0.606 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -17.500 0.477 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.627 4.627 8 H 0.087 0.913 9 C -0.048 4.048 10 C 0.309 3.691 11 O -0.415 6.415 12 N -0.406 5.406 13 C 0.005 3.995 14 C -0.154 4.154 15 H 0.108 0.892 16 C -0.186 4.186 17 C -0.031 4.031 18 O -0.297 6.297 19 C -0.029 4.029 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.228 0.772 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.023 -15.706 0.241 15.838 hybrid contribution -0.377 -1.856 0.338 1.924 sum 1.646 -17.562 0.579 17.649 Atomic orbital electron populations 1.70807 1.06858 1.30285 1.47286 1.25920 0.96442 1.02862 0.93658 0.83420 0.74713 0.74538 0.76818 1.21408 1.21281 1.21038 1.22004 0.95672 0.90143 1.54908 0.91251 1.19357 0.94827 0.92397 0.98216 1.21662 0.90924 0.83167 0.73364 1.90547 1.17915 1.84596 1.48463 1.46331 1.09436 1.06038 1.78811 1.21221 0.92040 0.84017 1.02176 1.22823 0.98132 0.95442 0.98983 0.89229 1.23148 0.99712 0.94958 1.00745 1.23552 0.97131 0.93488 0.88890 1.88885 1.77973 1.32228 1.30648 1.23319 0.96804 0.89472 0.93327 0.92432 0.94491 0.94438 0.77223 0.91693 0.91807 0.89887 0.89879 0.92209 0.88949 0.92164 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.72 13.65 55.43 0.76 -26.96 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.08 26.13 29.90 -169.99 -5.08 21.05 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.59 -17.47 8.92 -34.44 -0.31 -17.78 16 8 H 0.07 2.17 6.75 -52.49 -0.35 1.81 16 9 C -0.01 -0.22 4.77 -29.03 -0.14 -0.36 16 10 C 0.52 11.96 7.82 -10.98 -0.09 11.88 16 11 O -0.54 -14.43 15.46 5.55 0.09 -14.34 16 12 N -0.75 -12.66 5.28 -60.29 -0.32 -12.98 16 13 C 0.13 1.86 4.79 -4.04 -0.02 1.84 16 14 C -0.13 -1.42 3.12 -89.09 -0.28 -1.70 16 15 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 16 C -0.15 -1.30 6.71 -24.72 -0.17 -1.47 16 17 C 0.05 0.41 7.72 38.22 0.29 0.70 16 18 O -0.38 -4.69 11.52 -35.23 -0.41 -5.10 16 19 C 0.05 0.54 7.07 37.73 0.27 0.80 16 20 H 0.27 7.84 7.22 -40.82 -0.29 7.54 16 21 H 0.04 0.93 8.01 -51.92 -0.42 0.52 16 22 H 0.04 0.95 8.00 -51.93 -0.42 0.53 16 23 H 0.39 5.52 8.32 -40.82 -0.34 5.18 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.13 7.57 -51.93 -0.39 0.74 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -34.40 264.25 -5.89 -40.29 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.38 Total: -0.17 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.53 Total: -5.77 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.44 Total: -39.94 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.32 Total: -19.44 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.40 -5.89 -40.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202259.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.104 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds