Wall clock time and date at job start Sun Mar 29 2020 22:05:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86803 * 119.99579 * 2 1
4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1
5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1
6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1
7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3
8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1
10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2
11 11 O 1.21283 * 120.00057 * 359.97438 * 10 9 7
12 12 N 1.34781 * 120.00015 * 180.02562 * 10 9 7
13 13 C 1.46501 * 119.99823 * 180.02562 * 12 10 9
14 14 C 1.53003 * 109.46732 * 179.97438 * 13 12 10
15 15 H 1.08999 * 110.43560 * 303.90784 * 14 13 12
16 16 C 1.54811 * 110.48151 * 181.21914 * 14 13 12
17 17 C 1.55004 * 102.08850 * 220.43936 * 16 14 13
18 18 O 1.44382 * 103.48894 * 37.02765 * 17 16 14
19 19 C 1.43744 * 106.97463 * 319.93786 * 18 17 16
20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3
21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2
22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2
23 23 H 0.97001 * 119.99466 * 359.97438 * 12 10 9
24 24 H 1.08995 * 109.46839 * 299.99764 * 13 12 10
25 25 H 1.09001 * 109.47305 * 59.99893 * 13 12 10
26 26 H 1.08995 * 110.91449 * 338.64108 * 16 14 13
27 27 H 1.09009 * 110.90533 * 102.25171 * 16 14 13
28 28 H 1.08995 * 110.61679 * 278.52287 * 17 16 14
29 29 H 1.08995 * 110.61289 * 155.52751 * 17 16 14
30 30 H 1.08998 * 109.87823 * 267.09183 * 19 18 17
31 31 H 1.09001 * 110.00334 * 146.00617 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0464 1.4001
5 1 3.5466 1.4403 -0.7001
6 1 1.4465 2.6527 -0.6999
7 6 2.0046 -1.1939 0.0056
8 1 3.0846 -1.1939 0.0052
9 6 1.2512 -2.4991 0.0123
10 6 2.2305 -3.6445 0.0182
11 8 3.4229 -3.4228 0.0166
12 7 1.7813 -4.9152 0.0242
13 6 2.7334 -6.0286 0.0305
14 6 1.9684 -7.3537 0.0372
15 1 1.2843 -7.3939 0.8848
16 6 2.9532 -8.5476 0.0748
17 6 2.2884 -9.5477 -0.9053
18 8 1.7470 -8.6971 -1.9387
19 6 1.1999 -7.5394 -1.2855
20 1 -0.4850 -0.8401 -0.0004
21 1 0.6248 -2.5524 0.9029
22 1 0.6241 -2.5613 -0.8770
23 1 0.8276 -5.0924 0.0251
24 1 3.3607 -5.9753 -0.8593
25 1 3.3594 -5.9664 0.9206
26 1 3.9391 -8.2501 -0.2823
27 1 3.0152 -8.9692 1.0781
28 1 1.4923 -10.1012 -0.4074
29 1 3.0307 -10.2299 -1.3194
30 1 0.1409 -7.6957 -1.0800
31 1 1.3291 -6.6597 -1.9159
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001143202259.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:05:56
Heat of formation + Delta-G solvation = -102.390452 kcal
Electronic energy + Delta-G solvation = -13982.501558 eV
Core-core repulsion = 11456.196893 eV
Total energy + Delta-G solvation = -2526.304665 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.82062 -38.52263 -34.84392 -33.25698 -32.09666 -29.66640 -28.43644 -25.55484
-23.31049 -22.52722 -20.71277 -19.77500 -17.06654 -16.76270 -16.37250 -15.72081
-15.31270 -15.02810 -14.67839 -13.71469 -13.42192 -13.22014 -12.88157 -12.47573
-12.18973 -11.78197 -11.44334 -11.41301 -11.06695 -10.91854 -10.68691 -10.57370
-10.05224 -9.84903 -8.93024 -8.59054 -8.58670 -8.36780 -6.38182 -4.06935
3.47942 3.51930 3.60188 3.68247 3.73087 3.74384 4.34392 4.54206
4.58949 4.66140 4.94636 5.02063 5.20214 5.38741 5.44555 5.46953
5.50689 5.69839 5.74106 5.83466 5.98801 6.22754 6.65239 6.79128
6.95169 7.04034 7.86494 8.25526 8.56969 8.88777 9.12112 9.63081
11.01917
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.077103 B = 0.005394 C = 0.005213
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 363.065055 B = 5189.806372 C = 5369.955114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.014 3.986
3 Si 1.077 2.923
4 H -0.287 1.287
5 H -0.287 1.287
6 H -0.285 1.285
7 C -0.589 4.589
8 H 0.069 0.931
9 C -0.009 4.009
10 C 0.519 3.481
11 O -0.540 6.540
12 N -0.751 5.751
13 C 0.130 3.870
14 C -0.135 4.135
15 H 0.089 0.911
16 C -0.147 4.147
17 C 0.046 3.954
18 O -0.378 6.378
19 C 0.048 3.952
20 H 0.266 0.734
21 H 0.037 0.963
22 H 0.038 0.962
23 H 0.394 0.606
24 H 0.065 0.935
25 H 0.064 0.936
26 H 0.082 0.918
27 H 0.083 0.917
28 H 0.060 0.940
29 H 0.092 0.908
30 H 0.060 0.940
31 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.317 -17.500 0.477 17.556
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.189 4.189
3 Si 0.905 3.095
4 H -0.214 1.214
5 H -0.213 1.213
6 H -0.210 1.210
7 C -0.627 4.627
8 H 0.087 0.913
9 C -0.048 4.048
10 C 0.309 3.691
11 O -0.415 6.415
12 N -0.406 5.406
13 C 0.005 3.995
14 C -0.154 4.154
15 H 0.108 0.892
16 C -0.186 4.186
17 C -0.031 4.031
18 O -0.297 6.297
19 C -0.029 4.029
20 H 0.076 0.924
21 H 0.055 0.945
22 H 0.056 0.944
23 H 0.228 0.772
24 H 0.083 0.917
25 H 0.082 0.918
26 H 0.101 0.899
27 H 0.101 0.899
28 H 0.078 0.922
29 H 0.111 0.889
30 H 0.078 0.922
31 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 2.023 -15.706 0.241 15.838
hybrid contribution -0.377 -1.856 0.338 1.924
sum 1.646 -17.562 0.579 17.649
Atomic orbital electron populations
1.70807 1.06858 1.30285 1.47286 1.25920 0.96442 1.02862 0.93658
0.83420 0.74713 0.74538 0.76818 1.21408 1.21281 1.21038 1.22004
0.95672 0.90143 1.54908 0.91251 1.19357 0.94827 0.92397 0.98216
1.21662 0.90924 0.83167 0.73364 1.90547 1.17915 1.84596 1.48463
1.46331 1.09436 1.06038 1.78811 1.21221 0.92040 0.84017 1.02176
1.22823 0.98132 0.95442 0.98983 0.89229 1.23148 0.99712 0.94958
1.00745 1.23552 0.97131 0.93488 0.88890 1.88885 1.77973 1.32228
1.30648 1.23319 0.96804 0.89472 0.93327 0.92432 0.94491 0.94438
0.77223 0.91693 0.91807 0.89887 0.89879 0.92209 0.88949 0.92164
0.89122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.72 13.65 55.43 0.76 -26.96 16
2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16
3 Si 1.08 26.13 29.90 -169.99 -5.08 21.05 16
4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
7 C -0.59 -17.47 8.92 -34.44 -0.31 -17.78 16
8 H 0.07 2.17 6.75 -52.49 -0.35 1.81 16
9 C -0.01 -0.22 4.77 -29.03 -0.14 -0.36 16
10 C 0.52 11.96 7.82 -10.98 -0.09 11.88 16
11 O -0.54 -14.43 15.46 5.55 0.09 -14.34 16
12 N -0.75 -12.66 5.28 -60.29 -0.32 -12.98 16
13 C 0.13 1.86 4.79 -4.04 -0.02 1.84 16
14 C -0.13 -1.42 3.12 -89.09 -0.28 -1.70 16
15 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
16 C -0.15 -1.30 6.71 -24.72 -0.17 -1.47 16
17 C 0.05 0.41 7.72 38.22 0.29 0.70 16
18 O -0.38 -4.69 11.52 -35.23 -0.41 -5.10 16
19 C 0.05 0.54 7.07 37.73 0.27 0.80 16
20 H 0.27 7.84 7.22 -40.82 -0.29 7.54 16
21 H 0.04 0.93 8.01 -51.92 -0.42 0.52 16
22 H 0.04 0.95 8.00 -51.93 -0.42 0.53 16
23 H 0.39 5.52 8.32 -40.82 -0.34 5.18 16
24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
26 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16
27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16
28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.09 1.13 7.57 -51.93 -0.39 0.74 16
LS Contribution 264.25 15.07 3.98 3.98
Total: -1.00 -34.40 264.25 -5.89 -40.29
By element:
Atomic # 1 Polarization: 4.21 SS G_CDS: -4.38 Total: -0.17 kcal
Atomic # 6 Polarization: -5.24 SS G_CDS: -0.53 Total: -5.77 kcal
Atomic # 7 Polarization: -40.38 SS G_CDS: 0.44 Total: -39.94 kcal
Atomic # 8 Polarization: -19.12 SS G_CDS: -0.32 Total: -19.44 kcal
Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.05 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -34.40 -5.89 -40.29 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143202259.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.104 kcal
(2) G-P(sol) polarization free energy of solvation -34.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds