Wall clock time and date at job start Sun Mar 29 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00057 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00015 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99823 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46732 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.43560 * 303.90784 * 14 13 12 16 16 C 1.54811 * 110.48151 * 181.21914 * 14 13 12 17 17 C 1.55004 * 102.08850 * 220.43936 * 16 14 13 18 18 O 1.44382 * 103.48894 * 37.02765 * 17 16 14 19 19 C 1.43744 * 106.97463 * 319.93786 * 18 17 16 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 0.97001 * 119.99466 * 359.97438 * 12 10 9 24 24 H 1.08995 * 109.46839 * 299.99764 * 13 12 10 25 25 H 1.09001 * 109.47305 * 59.99893 * 13 12 10 26 26 H 1.08995 * 110.91449 * 338.64108 * 16 14 13 27 27 H 1.09009 * 110.90533 * 102.25171 * 16 14 13 28 28 H 1.08995 * 110.61679 * 278.52287 * 17 16 14 29 29 H 1.08995 * 110.61289 * 155.52751 * 17 16 14 30 30 H 1.08998 * 109.87823 * 267.09183 * 19 18 17 31 31 H 1.09001 * 110.00334 * 146.00617 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2305 -3.6445 0.0182 11 8 3.4229 -3.4228 0.0166 12 7 1.7813 -4.9152 0.0242 13 6 2.7334 -6.0286 0.0305 14 6 1.9684 -7.3537 0.0372 15 1 1.2843 -7.3939 0.8848 16 6 2.9532 -8.5476 0.0748 17 6 2.2884 -9.5477 -0.9053 18 8 1.7470 -8.6971 -1.9387 19 6 1.1999 -7.5394 -1.2855 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 0.8276 -5.0924 0.0251 24 1 3.3607 -5.9753 -0.8593 25 1 3.3594 -5.9664 0.9206 26 1 3.9391 -8.2501 -0.2823 27 1 3.0152 -8.9692 1.0781 28 1 1.4923 -10.1012 -0.4074 29 1 3.0307 -10.2299 -1.3194 30 1 0.1409 -7.6957 -1.0800 31 1 1.3291 -6.6597 -1.9159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202259.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:55 Heat of formation + Delta-G solvation = -128.140884 kcal Electronic energy + Delta-G solvation = -13983.618181 eV Core-core repulsion = 11456.196893 eV Total energy + Delta-G solvation = -2527.421288 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94390 -40.04072 -36.24486 -35.46371 -33.26564 -30.97000 -29.98099 -26.92225 -25.20704 -23.45889 -21.77317 -21.38020 -18.99862 -18.03870 -17.71535 -16.91330 -16.71538 -16.27031 -15.90143 -15.65219 -15.06074 -14.66430 -14.16275 -13.83188 -13.60765 -13.22194 -12.88385 -12.70924 -12.49096 -12.22827 -12.12397 -11.93392 -11.71885 -11.00688 -10.67965 -10.60209 -10.58688 -10.11181 -8.71925 -6.41474 1.52693 1.60922 1.74443 1.81870 2.26507 2.56462 2.97161 3.12418 3.45120 3.65825 3.84351 4.16946 4.25539 4.27392 4.32661 4.61422 4.63274 4.72969 4.75960 4.84591 4.88312 4.97102 5.00440 5.14066 5.44438 5.80086 5.89184 6.20358 6.46411 6.70842 7.29061 7.41341 8.70607 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077103 B = 0.005394 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.065055 B = 5189.806372 C = 5369.955114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.028 4.028 3 Si 1.120 2.880 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.614 4.614 8 H 0.046 0.954 9 C -0.010 4.010 10 C 0.521 3.479 11 O -0.584 6.584 12 N -0.725 5.725 13 C 0.130 3.870 14 C -0.124 4.124 15 H 0.112 0.888 16 C -0.144 4.144 17 C 0.042 3.958 18 O -0.406 6.406 19 C 0.046 3.954 20 H 0.260 0.740 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.412 0.588 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -18.661 1.093 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.226 4.226 3 Si 0.941 3.059 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.653 4.653 8 H 0.064 0.936 9 C -0.049 4.049 10 C 0.310 3.690 11 O -0.463 6.463 12 N -0.379 5.379 13 C 0.006 3.994 14 C -0.143 4.143 15 H 0.130 0.870 16 C -0.182 4.182 17 C -0.034 4.034 18 O -0.326 6.326 19 C -0.031 4.031 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.248 0.752 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.681 -16.937 0.863 17.042 hybrid contribution -0.306 -1.602 0.131 1.636 sum 1.374 -18.538 0.994 18.616 Atomic orbital electron populations 1.70908 1.07390 1.30117 1.48390 1.27287 0.96627 1.06206 0.92525 0.82885 0.73894 0.71203 0.77921 1.19594 1.20652 1.19952 1.22256 0.94956 0.92478 1.55573 0.93579 1.19250 0.95061 0.92382 0.98247 1.21188 0.89653 0.84638 0.73566 1.90524 1.19263 1.85551 1.50965 1.46005 1.10949 1.04767 1.76197 1.21375 0.91877 0.84812 1.01299 1.22782 0.98470 0.93547 0.99507 0.87032 1.23171 0.98732 0.94074 1.02196 1.23780 0.98005 0.93273 0.88303 1.88859 1.78389 1.32880 1.32431 1.23334 0.97920 0.88810 0.93059 0.92999 0.94137 0.94293 0.75223 0.93265 0.92054 0.90681 0.87399 0.90331 0.87657 0.90327 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.65 21.45 0.29 -55.93 16 2 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 3 Si 1.12 52.22 29.90 68.60 2.05 54.27 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.61 -37.01 8.92 25.60 0.23 -36.78 16 8 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 9 C -0.01 -0.51 4.77 29.10 0.14 -0.37 16 10 C 0.52 24.14 7.82 87.66 0.69 24.82 16 11 O -0.58 -31.81 15.46 -3.04 -0.05 -31.85 16 12 N -0.73 -23.79 5.28 -463.05 -2.44 -26.23 16 13 C 0.13 3.58 4.79 86.38 0.41 3.99 16 14 C -0.12 -2.31 3.12 -9.80 -0.03 -2.34 16 15 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 16 C -0.14 -2.14 6.71 31.90 0.21 -1.93 16 17 C 0.04 0.63 7.72 72.67 0.56 1.20 16 18 O -0.41 -9.37 11.52 -148.98 -1.72 -11.09 16 19 C 0.05 0.94 7.07 72.35 0.51 1.45 16 20 H 0.26 15.44 7.22 -92.70 -0.67 14.77 16 21 H 0.04 2.05 8.01 -2.38 -0.02 2.03 16 22 H 0.04 1.98 8.00 -2.39 -0.02 1.96 16 23 H 0.41 10.81 8.32 -92.71 -0.77 10.04 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.25 7.87 -2.39 -0.02 1.23 16 27 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.72 7.57 -2.39 -0.02 1.70 16 Total: -1.00 -74.34 264.25 1.77 -72.57 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.45 Total: 9.41 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 3.18 Total: -11.15 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.15 Total: -82.16 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.76 Total: -42.94 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -74.34 1.77 -72.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202259.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.574 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds