Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 112.84853 * 2 1 4 4 C 1.53777 * 113.61549 * 228.80402 * 2 1 3 5 5 C 1.53790 * 87.08077 * 219.93394 * 4 2 1 6 6 H 1.09000 * 113.60766 * 140.06496 * 5 4 2 7 7 N 1.46494 * 113.61312 * 270.88474 * 5 4 2 8 8 C 1.34784 * 119.99635 * 203.47065 * 7 5 4 9 9 O 1.21279 * 119.99925 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99961 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47266 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99865 * 359.97438 * 11 10 8 13 13 C 1.37876 * 119.99925 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99914 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00270 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47049 * 89.99711 * 15 13 11 17 17 H 1.48492 * 109.47045 * 210.00324 * 15 13 11 18 18 H 1.48500 * 109.46729 * 329.99969 * 15 13 11 19 19 C 1.53785 * 87.16911 * 25.47356 * 5 4 2 20 20 H 1.09002 * 109.47007 * 191.19644 * 1 2 3 21 21 H 1.09002 * 109.47112 * 311.19688 * 1 2 3 22 22 H 1.09001 * 109.46630 * 71.19635 * 1 2 3 23 23 H 0.96697 * 114.00136 * 48.80766 * 3 2 1 24 24 H 1.09000 * 113.61770 * 105.39128 * 4 2 1 25 25 H 1.09000 * 113.61327 * 334.48201 * 4 2 1 26 26 H 0.96995 * 120.00292 * 23.74497 * 7 5 4 27 27 H 1.09004 * 109.46932 * 300.00223 * 10 8 7 28 28 H 1.08997 * 109.47392 * 59.99562 * 10 8 7 29 29 H 0.96998 * 120.00171 * 180.02562 * 14 13 11 30 30 H 1.09000 * 113.61017 * 89.07843 * 19 5 4 31 31 H 1.08996 * 113.61117 * 219.97309 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1460 -0.9280 -1.0602 5 6 3.1937 -1.3119 -0.0019 6 1 3.4478 -2.3718 -0.0035 7 7 4.3738 -0.4439 -0.0026 8 6 5.5425 -0.8951 0.4947 9 8 5.6169 -2.0194 0.9431 10 6 6.7564 -0.0020 0.4945 11 6 7.9230 -0.7398 1.0992 12 1 7.7978 -1.7539 1.4491 13 6 9.1501 -0.1203 1.2058 14 7 10.1680 -0.7640 1.7340 15 14 9.3668 1.6335 0.5999 16 1 9.0712 2.5793 1.7060 17 1 10.7655 1.8294 0.1414 18 1 8.4357 1.8856 -0.5291 19 6 2.1490 -0.9304 1.0603 20 1 -0.3633 -1.0081 0.1996 21 1 -0.3633 0.6769 0.7733 22 1 -0.3632 0.3313 -0.9729 23 1 1.7015 1.9053 0.6647 24 1 2.5638 -0.3971 -1.9156 25 1 1.4951 -1.7531 -1.3495 26 1 4.3131 0.4569 -0.3572 27 1 6.9981 0.2823 -0.5297 28 1 6.5489 0.8933 1.0806 29 1 11.0312 -0.3280 1.8093 30 1 1.4990 -1.7562 1.3496 31 1 2.5692 -0.4014 1.9157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = -71.319603 kcal Electronic energy + Delta-G solvation = -14274.556633 eV Core-core repulsion = 11749.599300 eV Total energy + Delta-G solvation = -2524.957332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.17620 -38.04915 -34.97240 -32.78450 -32.49503 -29.83810 -28.74477 -25.85433 -23.69385 -22.08508 -19.92876 -19.22332 -16.88372 -16.55084 -15.95051 -15.53478 -15.06305 -14.40471 -14.34489 -14.02105 -13.50755 -13.00550 -12.73460 -12.33697 -12.12125 -11.90134 -11.62954 -11.44735 -11.17064 -10.76021 -10.50956 -10.31784 -9.93576 -9.70748 -9.21046 -8.71171 -8.54027 -8.40629 -5.98706 -3.97864 3.30323 3.37865 3.38553 3.64431 3.70865 4.04093 4.39150 4.45263 4.61339 4.78951 4.94737 5.30984 5.32623 5.44720 5.56086 5.59121 5.77239 5.81715 5.88697 6.07070 6.11615 6.37680 6.69306 6.99034 7.17502 7.52642 7.61791 8.28864 8.63294 9.18221 9.25288 9.60302 11.14400 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053504 B = 0.006944 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.200687 B = 4031.284383 C = 4369.210571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 O -0.542 6.542 4 C -0.137 4.137 5 C 0.130 3.870 6 H 0.098 0.902 7 N -0.725 5.725 8 C 0.522 3.478 9 O -0.536 6.536 10 C -0.029 4.029 11 C -0.511 4.511 12 H 0.092 0.908 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 C -0.181 4.181 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.379 0.621 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.401 0.599 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.092 0.908 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.609 4.650 -4.812 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 O -0.348 6.348 4 C -0.175 4.175 5 C 0.023 3.977 6 H 0.116 0.884 7 N -0.379 5.379 8 C 0.311 3.689 9 O -0.411 6.411 10 C -0.069 4.069 11 C -0.549 4.549 12 H 0.110 0.890 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.220 4.220 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.226 0.774 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.236 0.764 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.964 3.584 -4.922 19.917 hybrid contribution -0.228 1.666 0.066 1.683 sum -19.191 5.250 -4.856 20.481 Atomic orbital electron populations 1.22283 0.95146 1.02738 1.02302 1.22293 0.91319 0.83105 0.97208 1.86454 1.65812 1.21749 1.60800 1.23461 0.98062 0.98405 0.97552 1.21512 0.85206 0.96317 0.94621 0.88411 1.45976 1.09056 1.17496 1.65383 1.21422 0.83754 0.88489 0.75199 1.90565 1.84652 1.20796 1.45084 1.19672 0.92269 0.95896 0.99073 1.21019 0.91727 1.02607 1.39545 0.89005 1.24980 0.95790 0.97640 0.94939 1.69899 1.01479 1.37338 1.45051 0.86877 0.77629 0.85631 0.79679 1.20184 1.21163 1.19074 1.24234 0.99142 1.00072 0.98543 0.91292 0.92351 0.91908 0.77356 0.90113 0.87942 0.76365 0.93653 0.94080 0.92654 0.88992 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.44 37.16 0.35 -0.92 16 2 C 0.10 1.05 1.82 -89.67 -0.16 0.88 16 3 O -0.54 -5.89 12.16 -35.23 -0.43 -6.32 16 4 C -0.14 -1.52 7.21 -25.92 -0.19 -1.71 16 5 C 0.13 1.94 4.30 -67.11 -0.29 1.65 16 6 H 0.10 1.61 7.50 -51.93 -0.39 1.22 16 7 N -0.72 -12.82 5.14 -53.01 -0.27 -13.09 16 8 C 0.52 12.06 7.82 -10.98 -0.09 11.97 16 9 O -0.54 -14.42 15.08 5.56 0.08 -14.34 16 10 C -0.03 -0.72 4.53 -29.04 -0.13 -0.85 16 11 C -0.51 -15.41 9.48 -34.44 -0.33 -15.74 16 12 H 0.09 3.13 7.00 -52.49 -0.37 2.77 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 15 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.11 6.54 56.52 0.37 -5.75 16 19 C -0.18 -2.21 7.28 -25.78 -0.19 -2.40 16 20 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 21 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.38 2.72 9.04 45.56 0.41 3.13 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 26 H 0.40 6.40 7.62 -40.82 -0.31 6.09 16 27 H 0.05 1.07 7.20 -51.93 -0.37 0.69 16 28 H 0.04 0.95 7.57 -51.93 -0.39 0.56 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.09 0.96 7.97 -51.93 -0.41 0.54 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -35.11 262.75 -5.20 -40.30 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.53 Total: 5.59 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.12 Total: -5.20 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.50 Total: -40.78 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.34 Total: -20.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.11 -5.20 -40.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.015 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds