Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 112.84853 * 2 1 4 4 C 1.53777 * 113.61549 * 228.80402 * 2 1 3 5 5 C 1.53790 * 87.08077 * 219.93394 * 4 2 1 6 6 H 1.09000 * 113.60766 * 140.06496 * 5 4 2 7 7 N 1.46494 * 113.61312 * 270.88474 * 5 4 2 8 8 C 1.34784 * 119.99635 * 203.47065 * 7 5 4 9 9 O 1.21279 * 119.99925 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99961 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47266 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99865 * 359.97438 * 11 10 8 13 13 C 1.37876 * 119.99925 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99914 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00270 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47049 * 89.99711 * 15 13 11 17 17 H 1.48492 * 109.47045 * 210.00324 * 15 13 11 18 18 H 1.48500 * 109.46729 * 329.99969 * 15 13 11 19 19 C 1.53785 * 87.16911 * 25.47356 * 5 4 2 20 20 H 1.09002 * 109.47007 * 191.19644 * 1 2 3 21 21 H 1.09002 * 109.47112 * 311.19688 * 1 2 3 22 22 H 1.09001 * 109.46630 * 71.19635 * 1 2 3 23 23 H 0.96697 * 114.00136 * 48.80766 * 3 2 1 24 24 H 1.09000 * 113.61770 * 105.39128 * 4 2 1 25 25 H 1.09000 * 113.61327 * 334.48201 * 4 2 1 26 26 H 0.96995 * 120.00292 * 23.74497 * 7 5 4 27 27 H 1.09004 * 109.46932 * 300.00223 * 10 8 7 28 28 H 1.08997 * 109.47392 * 59.99562 * 10 8 7 29 29 H 0.96998 * 120.00171 * 180.02562 * 14 13 11 30 30 H 1.09000 * 113.61017 * 89.07843 * 19 5 4 31 31 H 1.08996 * 113.61117 * 219.97309 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1460 -0.9280 -1.0602 5 6 3.1937 -1.3119 -0.0019 6 1 3.4478 -2.3718 -0.0035 7 7 4.3738 -0.4439 -0.0026 8 6 5.5425 -0.8951 0.4947 9 8 5.6169 -2.0194 0.9431 10 6 6.7564 -0.0020 0.4945 11 6 7.9230 -0.7398 1.0992 12 1 7.7978 -1.7539 1.4491 13 6 9.1501 -0.1203 1.2058 14 7 10.1680 -0.7640 1.7340 15 14 9.3668 1.6335 0.5999 16 1 9.0712 2.5793 1.7060 17 1 10.7655 1.8294 0.1414 18 1 8.4357 1.8856 -0.5291 19 6 2.1490 -0.9304 1.0603 20 1 -0.3633 -1.0081 0.1996 21 1 -0.3633 0.6769 0.7733 22 1 -0.3632 0.3313 -0.9729 23 1 1.7015 1.9053 0.6647 24 1 2.5638 -0.3971 -1.9156 25 1 1.4951 -1.7531 -1.3495 26 1 4.3131 0.4569 -0.3572 27 1 6.9981 0.2823 -0.5297 28 1 6.5489 0.8933 1.0806 29 1 11.0312 -0.3280 1.8093 30 1 1.4990 -1.7562 1.3496 31 1 2.5692 -0.4014 1.9157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = -100.562219 kcal Electronic energy + Delta-G solvation = -14275.824688 eV Core-core repulsion = 11749.599300 eV Total energy + Delta-G solvation = -2526.225387 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32953 -39.64616 -36.01409 -35.01852 -33.93219 -31.67567 -29.79027 -26.78659 -25.61577 -23.28295 -21.50721 -20.42429 -19.04424 -17.69603 -17.30756 -16.98776 -16.28445 -16.16557 -15.74314 -15.32185 -14.92411 -14.43866 -14.12544 -13.65156 -13.43279 -13.02835 -12.84806 -12.62962 -12.52316 -12.38983 -12.16845 -11.86203 -11.54572 -11.22484 -10.79906 -10.64818 -10.53424 -9.89768 -8.27311 -6.35832 1.38633 1.42739 1.53663 1.83850 2.35389 2.38044 3.05695 3.16495 3.49157 3.72780 3.90019 4.02544 4.29223 4.61836 4.65939 4.70448 4.74263 4.85580 4.89209 5.00350 5.03870 5.11605 5.20675 5.35304 5.47662 5.75141 6.25140 6.69419 6.85416 6.93718 7.24857 7.52084 8.90384 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053504 B = 0.006944 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.200687 B = 4031.284383 C = 4369.210571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 O -0.559 6.559 4 C -0.124 4.124 5 C 0.101 3.899 6 H 0.073 0.927 7 N -0.701 5.701 8 C 0.519 3.481 9 O -0.589 6.589 10 C -0.027 4.027 11 C -0.535 4.535 12 H 0.028 0.972 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.283 1.283 18 H -0.233 1.233 19 C -0.177 4.177 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.395 0.605 24 H 0.078 0.922 25 H 0.130 0.870 26 H 0.413 0.587 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.269 0.731 30 H 0.111 0.889 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.920 7.404 -6.253 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.072 3.928 3 O -0.368 6.368 4 C -0.162 4.162 5 C -0.005 4.005 6 H 0.091 0.909 7 N -0.355 5.355 8 C 0.308 3.692 9 O -0.468 6.468 10 C -0.067 4.067 11 C -0.573 4.573 12 H 0.047 0.953 13 C -0.194 4.194 14 N -0.593 5.593 15 Si 0.783 3.217 16 H -0.186 1.186 17 H -0.209 1.209 18 H -0.156 1.156 19 C -0.216 4.216 20 H 0.098 0.902 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.245 0.755 24 H 0.097 0.903 25 H 0.148 0.852 26 H 0.251 0.749 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.350 6.371 -6.382 23.177 hybrid contribution 0.474 0.700 0.561 1.015 sum -20.876 7.072 -5.822 22.797 Atomic orbital electron populations 1.22224 0.92466 1.03863 1.03235 1.22195 0.93061 0.82505 0.95028 1.86404 1.66619 1.22109 1.61619 1.23490 0.96630 0.99464 0.96570 1.21894 0.85171 0.94639 0.98769 0.90910 1.45677 1.08395 1.18151 1.63234 1.21207 0.85051 0.87559 0.75348 1.90549 1.85609 1.22822 1.47840 1.19584 0.91059 0.96156 0.99892 1.21169 0.94656 1.00828 1.40646 0.95328 1.26142 0.94735 1.03936 0.94632 1.70091 1.02398 1.40279 1.46560 0.85518 0.78286 0.77594 0.80311 1.18571 1.20865 1.15593 1.24267 0.98432 1.01275 0.97663 0.90248 0.91148 0.91150 0.75487 0.90302 0.85177 0.74927 0.91489 0.91646 0.92239 0.87028 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.44 71.98 0.68 -1.11 16 2 C 0.11 1.97 1.82 -10.18 -0.02 1.95 16 3 O -0.56 -10.35 12.16 -148.98 -1.81 -12.16 16 4 C -0.12 -2.42 7.21 31.12 0.22 -2.19 16 5 C 0.10 2.93 4.30 45.52 0.20 3.12 16 6 H 0.07 2.47 7.50 -2.39 -0.02 2.45 16 7 N -0.70 -24.22 5.14 -440.02 -2.26 -26.48 16 8 C 0.52 24.36 7.82 87.66 0.69 25.05 16 9 O -0.59 -33.40 15.08 -3.03 -0.05 -33.45 16 10 C -0.03 -1.32 4.53 29.10 0.13 -1.19 16 11 C -0.53 -33.43 9.48 25.60 0.24 -33.19 16 12 H 0.03 2.09 7.00 -2.91 -0.02 2.07 16 13 C 0.00 0.11 5.47 84.65 0.46 0.58 16 14 N -0.95 -62.41 13.96 21.45 0.30 -62.11 16 15 Si 0.96 43.46 27.47 68.60 1.88 45.35 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 19 C -0.18 -4.05 7.28 31.21 0.23 -3.82 16 20 H 0.08 0.75 7.95 -2.39 -0.02 0.73 16 21 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.39 4.38 9.04 -74.06 -0.67 3.71 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.13 1.83 8.10 -2.39 -0.02 1.81 16 26 H 0.41 12.28 7.62 -92.71 -0.71 11.57 16 27 H 0.07 2.98 7.20 -2.38 -0.02 2.96 16 28 H 0.07 2.87 7.57 -2.39 -0.02 2.86 16 29 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 30 H 0.11 2.09 7.97 -2.39 -0.02 2.07 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -81.13 262.75 0.61 -80.53 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.29 Total: 19.12 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 2.83 Total: -10.80 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.96 Total: -88.59 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.86 Total: -45.61 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.35 kcal Total: -81.13 0.61 -80.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.035 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds