Wall clock time and date at job start Sun Mar 29 2020 22:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46848 * 180.02562 * 9 7 2 11 11 O 1.21274 * 120.00224 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99795 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.01814 * 33.60423 * 13 12 10 15 15 C 1.54267 * 110.03012 * 272.16248 * 13 12 10 16 16 C 1.54894 * 104.19463 * 217.10370 * 15 13 12 17 17 C 1.54896 * 102.74581 * 37.94632 * 16 15 13 18 18 C 1.53875 * 110.03130 * 154.99871 * 13 12 10 19 19 H 1.09008 * 110.03056 * 238.61805 * 18 13 12 20 20 O 1.42900 * 110.03465 * 359.97438 * 18 13 12 21 21 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 23 23 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 24 24 H 0.96996 * 120.00598 * 359.97438 * 12 10 9 25 25 H 1.08998 * 110.48464 * 335.78354 * 15 13 12 26 26 H 1.08999 * 110.48153 * 98.42783 * 15 13 12 27 27 H 1.08996 * 110.75423 * 279.63016 * 16 15 13 28 28 H 1.09000 * 110.91340 * 156.32770 * 16 15 13 29 29 H 1.09002 * 110.47945 * 203.37626 * 17 16 15 30 30 H 1.08994 * 110.59922 * 80.78995 * 17 16 15 31 31 H 0.96703 * 114.00445 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 8 3.4227 -3.4229 0.0031 12 7 1.7811 -4.9152 0.0015 13 6 2.7332 -6.0287 0.0022 14 1 3.6236 -5.7580 0.5696 15 6 3.1192 -6.3948 -1.4459 16 6 3.2453 -7.9385 -1.4267 17 6 2.0910 -8.3640 -0.4855 18 6 2.0795 -7.2808 0.6127 19 1 2.6527 -7.6177 1.4766 20 8 0.7351 -6.9911 1.0011 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 0.8275 -5.0925 0.0008 25 1 2.3373 -6.0845 -2.1391 26 1 4.0716 -5.9375 -1.7140 27 1 4.2090 -8.2422 -1.0178 28 1 3.1027 -8.3530 -2.4246 29 1 2.2932 -9.3439 -0.0529 30 1 1.1423 -8.3733 -1.0221 31 1 0.2685 -7.7419 1.3932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:31 Heat of formation + Delta-G solvation = -106.507121 kcal Electronic energy + Delta-G solvation = -14331.503198 eV Core-core repulsion = 11805.020020 eV Total energy + Delta-G solvation = -2526.483178 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56245 -37.76881 -35.11980 -33.18386 -32.97810 -28.92430 -27.74463 -26.81145 -23.21874 -21.04507 -20.27894 -19.76163 -17.40296 -16.89232 -16.19739 -15.38354 -15.13357 -14.50924 -14.04289 -13.78080 -13.58131 -13.00828 -12.52924 -12.29511 -11.81275 -11.48275 -11.25477 -11.13782 -10.95603 -10.67126 -10.59207 -10.52557 -10.03660 -9.99974 -8.81794 -8.49235 -8.38425 -8.28908 -6.31656 -3.99650 3.51976 3.54765 3.69643 3.72369 3.75019 4.31739 4.49307 4.50753 4.63228 4.90059 5.16537 5.39890 5.45298 5.48267 5.49631 5.60973 5.69091 5.86294 6.01572 6.16139 6.23448 6.46943 6.91590 7.11333 7.15192 7.58380 8.01683 8.46255 8.63682 8.95818 9.28209 9.70478 11.08405 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059968 B = 0.006587 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.801149 B = 4249.734287 C = 4512.809850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.008 4.008 10 C 0.519 3.481 11 O -0.547 6.547 12 N -0.729 5.729 13 C 0.148 3.852 14 H 0.090 0.910 15 C -0.136 4.136 16 C -0.122 4.122 17 C -0.157 4.157 18 C 0.094 3.906 19 H 0.063 0.937 20 O -0.559 6.559 21 H 0.266 0.734 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.404 0.596 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -17.744 -0.426 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.626 4.626 8 H 0.087 0.913 9 C -0.047 4.047 10 C 0.309 3.691 11 O -0.423 6.423 12 N -0.384 5.384 13 C 0.041 3.959 14 H 0.108 0.892 15 C -0.174 4.174 16 C -0.160 4.160 17 C -0.195 4.195 18 C 0.034 3.966 19 H 0.081 0.919 20 O -0.364 6.364 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.240 0.760 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.872 -15.316 -0.642 15.596 hybrid contribution -0.412 -2.536 0.224 2.579 sum 2.460 -17.852 -0.418 18.025 Atomic orbital electron populations 1.70819 1.06844 1.30299 1.47349 1.25916 0.96474 1.02820 0.93791 0.83449 0.74709 0.74802 0.76704 1.21386 1.21378 1.20877 1.21984 0.95605 0.90217 1.54759 0.91340 1.19326 0.94850 0.92358 0.98160 1.21653 0.90818 0.83405 0.73259 1.90515 1.17910 1.84670 1.49244 1.46106 1.10044 1.04844 1.77425 1.21488 0.93289 0.85354 0.95738 0.89169 1.22840 1.02563 0.94960 0.97084 1.22378 0.98110 0.95946 0.99520 1.23116 1.00247 0.98328 0.97763 1.22759 0.83638 0.94561 0.95663 0.91891 1.86439 1.25626 1.41024 1.83328 0.92420 0.94511 0.94598 0.76016 0.90895 0.90826 0.91251 0.91215 0.91419 0.90415 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.43 13.65 55.43 0.76 -27.68 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.08 26.60 29.90 -169.99 -5.08 21.52 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.59 -17.92 8.92 -34.44 -0.31 -18.23 16 8 H 0.07 2.18 6.75 -52.49 -0.35 1.83 16 9 C -0.01 -0.20 4.77 -29.04 -0.14 -0.34 16 10 C 0.52 12.64 7.82 -10.98 -0.09 12.55 16 11 O -0.55 -14.99 15.11 5.56 0.08 -14.90 16 12 N -0.73 -13.82 4.82 -52.72 -0.25 -14.07 16 13 C 0.15 2.31 3.25 -66.81 -0.22 2.10 16 14 H 0.09 1.56 7.56 -51.93 -0.39 1.17 16 15 C -0.14 -1.89 6.53 -25.07 -0.16 -2.05 16 16 C -0.12 -1.22 6.91 -24.73 -0.17 -1.39 16 17 C -0.16 -1.44 6.56 -25.07 -0.16 -1.60 16 18 C 0.09 1.08 4.26 -25.61 -0.11 0.97 16 19 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 20 O -0.56 -6.50 11.44 -35.23 -0.40 -6.91 16 21 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 22 H 0.04 0.99 8.01 -51.93 -0.42 0.57 16 23 H 0.04 0.96 8.01 -51.93 -0.42 0.54 16 24 H 0.40 7.10 7.21 -40.82 -0.29 6.80 16 25 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.72 8.08 -51.93 -0.42 0.31 16 31 H 0.38 2.56 9.11 45.56 0.42 2.98 16 LS Contribution 261.43 15.07 3.94 3.94 Total: -1.00 -35.22 261.43 -5.91 -41.13 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.50 Total: 4.68 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.45 Total: -7.71 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.50 Total: -41.75 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.32 Total: -21.81 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -5.08 Total: 21.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -35.22 -5.91 -41.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.376 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds