Wall clock time and date at job start Sun Mar 29 2020 22:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46848 * 180.02562 * 9 7 2 11 11 O 1.21274 * 120.00224 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99795 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.01814 * 33.60423 * 13 12 10 15 15 C 1.54267 * 110.03012 * 272.16248 * 13 12 10 16 16 C 1.54894 * 104.19463 * 217.10370 * 15 13 12 17 17 C 1.54896 * 102.74581 * 37.94632 * 16 15 13 18 18 C 1.53875 * 110.03130 * 154.99871 * 13 12 10 19 19 H 1.09008 * 110.03056 * 238.61805 * 18 13 12 20 20 O 1.42900 * 110.03465 * 359.97438 * 18 13 12 21 21 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 23 23 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 24 24 H 0.96996 * 120.00598 * 359.97438 * 12 10 9 25 25 H 1.08998 * 110.48464 * 335.78354 * 15 13 12 26 26 H 1.08999 * 110.48153 * 98.42783 * 15 13 12 27 27 H 1.08996 * 110.75423 * 279.63016 * 16 15 13 28 28 H 1.09000 * 110.91340 * 156.32770 * 16 15 13 29 29 H 1.09002 * 110.47945 * 203.37626 * 17 16 15 30 30 H 1.08994 * 110.59922 * 80.78995 * 17 16 15 31 31 H 0.96703 * 114.00445 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 8 3.4227 -3.4229 0.0031 12 7 1.7811 -4.9152 0.0015 13 6 2.7332 -6.0287 0.0022 14 1 3.6236 -5.7580 0.5696 15 6 3.1192 -6.3948 -1.4459 16 6 3.2453 -7.9385 -1.4267 17 6 2.0910 -8.3640 -0.4855 18 6 2.0795 -7.2808 0.6127 19 1 2.6527 -7.6177 1.4766 20 8 0.7351 -6.9911 1.0011 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 0.8275 -5.0925 0.0008 25 1 2.3373 -6.0845 -2.1391 26 1 4.0716 -5.9375 -1.7140 27 1 4.2090 -8.2422 -1.0178 28 1 3.1027 -8.3530 -2.4246 29 1 2.2932 -9.3439 -0.0529 30 1 1.1423 -8.3733 -1.0221 31 1 0.2685 -7.7419 1.3932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:30 Heat of formation + Delta-G solvation = -134.199086 kcal Electronic energy + Delta-G solvation = -14332.704012 eV Core-core repulsion = 11805.020020 eV Total energy + Delta-G solvation = -2527.683991 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.99613 -39.26518 -36.11991 -35.46765 -34.54048 -30.88629 -28.74481 -28.19780 -25.41015 -22.06900 -21.66434 -21.21053 -18.97395 -18.56195 -17.91044 -16.82269 -16.34296 -16.00175 -15.67610 -15.31440 -15.13213 -14.53001 -14.23194 -13.67558 -13.35739 -13.06103 -12.85213 -12.51335 -12.37890 -12.10744 -12.03647 -11.90749 -11.58439 -11.01140 -10.88027 -10.61485 -10.56678 -9.96901 -8.73354 -6.42617 1.51992 1.60241 1.76703 1.82144 2.27512 2.56343 3.11413 3.26963 3.56881 3.59432 4.02438 4.19411 4.29716 4.43053 4.48329 4.58221 4.70164 4.71031 4.94780 4.95483 5.05003 5.10413 5.15281 5.34977 5.58663 5.80504 6.18890 6.47338 6.75870 6.91680 7.31064 7.46128 8.68626 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059968 B = 0.006587 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.801149 B = 4249.734287 C = 4512.809850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.031 4.031 3 Si 1.120 2.880 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.614 4.614 8 H 0.048 0.952 9 C -0.008 4.008 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.131 3.869 14 H 0.068 0.932 15 C -0.137 4.137 16 C -0.113 4.113 17 C -0.144 4.144 18 C 0.101 3.899 19 H 0.080 0.920 20 O -0.579 6.579 21 H 0.259 0.741 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.413 0.587 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 -19.377 -0.382 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.229 4.229 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.652 4.652 8 H 0.066 0.934 9 C -0.048 4.048 10 C 0.308 3.692 11 O -0.465 6.465 12 N -0.361 5.361 13 C 0.026 3.974 14 H 0.086 0.914 15 C -0.176 4.176 16 C -0.150 4.150 17 C -0.181 4.181 18 C 0.041 3.959 19 H 0.098 0.902 20 O -0.389 6.389 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.250 0.750 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.817 -17.037 -0.593 17.279 hybrid contribution -0.454 -2.103 0.221 2.163 sum 2.363 -19.140 -0.372 19.289 Atomic orbital electron populations 1.70929 1.07443 1.29987 1.48353 1.27400 0.96636 1.06368 0.92448 0.82891 0.74099 0.71082 0.77815 1.19889 1.19908 1.19821 1.22231 0.94979 0.92341 1.55637 0.93397 1.19211 0.95069 0.92699 0.97771 1.21171 0.89644 0.84733 0.73664 1.90489 1.18991 1.85504 1.51533 1.45851 1.11183 1.04070 1.75037 1.21878 0.92364 0.85848 0.97305 0.91362 1.22792 1.01077 0.98372 0.95363 1.22379 0.99395 0.92255 1.01013 1.23060 0.99856 0.98721 0.96512 1.22687 0.83701 0.92573 0.96936 0.90203 1.86360 1.25704 1.43028 1.83772 0.93199 0.94834 0.94740 0.75006 0.92030 0.92684 0.89927 0.89577 0.88207 0.90218 0.74788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.65 21.45 0.29 -57.74 16 2 C -0.03 -1.86 5.46 84.66 0.46 -1.40 16 3 Si 1.12 53.31 29.90 68.60 2.05 55.36 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.61 -38.34 8.92 25.60 0.23 -38.11 16 8 H 0.05 3.14 6.75 -2.91 -0.02 3.13 16 9 C -0.01 -0.44 4.77 29.10 0.14 -0.30 16 10 C 0.52 25.96 7.82 87.66 0.69 26.65 16 11 O -0.59 -33.17 15.11 -3.01 -0.05 -33.22 16 12 N -0.71 -26.97 4.82 -439.09 -2.12 -29.09 16 13 C 0.13 4.05 3.25 45.72 0.15 4.20 16 14 H 0.07 2.41 7.56 -2.39 -0.02 2.39 16 15 C -0.14 -3.74 6.53 31.67 0.21 -3.53 16 16 C -0.11 -1.93 6.91 31.89 0.22 -1.71 16 17 C -0.14 -2.08 6.56 31.67 0.21 -1.87 16 18 C 0.10 2.06 4.26 31.32 0.13 2.20 16 19 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 20 O -0.58 -12.05 11.44 -148.98 -1.70 -13.75 16 21 H 0.26 15.99 7.22 -92.70 -0.67 15.32 16 22 H 0.03 1.85 8.01 -2.39 -0.02 1.83 16 23 H 0.03 1.89 8.01 -2.39 -0.02 1.87 16 24 H 0.41 14.34 7.21 -92.71 -0.67 13.67 16 25 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.40 4.14 9.11 -74.06 -0.67 3.47 16 Total: -1.00 -77.19 261.43 0.81 -76.38 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.10 Total: 15.94 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 2.43 Total: -13.88 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.82 Total: -86.82 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.75 Total: -46.97 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.05 Total: 55.36 kcal Total: -77.19 0.81 -76.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.820 kcal (2) G-P(sol) polarization free energy of solvation -77.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds