Wall clock time and date at job start Sun Mar 29 2020 22:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00041 * 2 1 4 4 H 1.48491 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 300.00195 * 3 2 1 6 6 H 1.48503 * 109.47077 * 59.99848 * 3 2 1 7 7 C 1.37872 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00552 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47505 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99847 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00297 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00046 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47115 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47376 * 179.97438 * 14 13 12 16 16 C 1.54033 * 113.92511 * 86.59699 * 15 14 13 17 17 O 1.44180 * 85.51695 * 136.81940 * 16 15 14 18 18 C 1.44178 * 93.33776 * 335.80740 * 17 16 15 19 19 H 0.96997 * 119.99886 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.46963 * 59.99627 * 9 7 2 21 21 H 1.08999 * 109.47222 * 300.00170 * 9 7 2 22 22 H 0.96998 * 119.99831 * 0.02562 * 12 10 9 23 23 H 1.08998 * 109.47456 * 60.00087 * 13 12 10 24 24 H 1.09003 * 109.47019 * 299.99629 * 13 12 10 25 25 H 1.09002 * 109.47521 * 59.99865 * 14 13 12 26 26 H 1.08999 * 109.47210 * 300.00059 * 14 13 12 27 27 H 1.09002 * 112.99937 * 314.66561 * 15 14 13 28 28 H 1.08997 * 113.86582 * 250.96654 * 16 15 14 29 29 H 1.09004 * 113.86499 * 22.67175 * 16 15 14 30 30 H 1.09003 * 113.86222 * 270.03964 * 18 17 16 31 31 H 1.09000 * 113.98005 * 138.36086 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7811 -4.9153 0.0011 13 6 2.7331 -6.0288 0.0016 14 6 1.9681 -7.3538 0.0015 15 6 2.9623 -8.5168 0.0014 16 6 3.4317 -8.9374 1.4069 17 8 3.2544 -10.2892 0.9381 18 6 2.2967 -9.9041 -0.0685 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 0.8274 -5.0926 0.0011 23 1 3.3596 -5.9707 0.8916 24 1 3.3597 -5.9715 -0.8884 25 1 1.3418 -7.4117 -0.8887 26 1 1.3410 -7.4114 0.8912 27 1 3.7752 -8.3821 -0.7121 28 1 4.4682 -8.6775 1.6218 29 1 2.7450 -8.6536 2.2045 30 1 1.2635 -9.9156 0.2785 31 1 2.4311 -10.4101 -1.0245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:02 Heat of formation + Delta-G solvation = -67.583930 kcal Electronic energy + Delta-G solvation = -13646.101432 eV Core-core repulsion = 11121.306091 eV Total energy + Delta-G solvation = -2524.795341 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.58030 -38.62087 -35.03217 -32.91789 -32.04175 -29.14332 -27.28245 -26.72066 -23.80838 -22.18756 -20.51960 -19.49326 -16.70535 -16.42488 -16.17772 -15.90739 -15.55975 -14.99779 -14.73701 -14.31110 -13.67242 -12.98100 -12.72957 -12.56673 -12.11283 -12.03460 -11.50012 -11.13527 -10.87538 -10.74721 -10.66133 -10.58020 -9.95421 -9.89852 -9.25175 -8.64926 -8.50362 -8.40509 -6.05922 -4.05243 3.33538 3.40524 3.48115 3.49150 3.72557 3.79728 4.04757 4.48729 4.62305 4.87036 5.02163 5.07755 5.15743 5.31068 5.32424 5.34808 5.53795 5.74843 5.87160 5.88864 6.02661 6.06962 6.39262 7.04030 7.18983 7.32902 7.96207 8.05772 8.44314 9.06285 9.23643 9.60071 11.06617 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.093143 B = 0.004656 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.541399 B = 6011.666899 C = 6187.372181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.004 3.996 10 C 0.513 3.487 11 O -0.547 6.547 12 N -0.751 5.751 13 C 0.121 3.879 14 C -0.129 4.129 15 C -0.152 4.152 16 C 0.037 3.963 17 O -0.386 6.386 18 C 0.038 3.962 19 H 0.261 0.739 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.396 0.604 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -16.742 0.140 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.094 0.906 9 C -0.035 4.035 10 C 0.303 3.697 11 O -0.423 6.423 12 N -0.406 5.406 13 C -0.004 4.004 14 C -0.167 4.167 15 C -0.170 4.170 16 C -0.039 4.039 17 O -0.305 6.305 18 C -0.039 4.039 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.229 0.771 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.813 -16.693 0.219 16.792 hybrid contribution -0.227 0.939 -0.074 0.969 sum 1.586 -15.754 0.145 15.834 Atomic orbital electron populations 1.69972 1.06050 1.26792 1.51342 1.25014 0.94915 0.99513 0.95237 0.86376 0.80335 0.82969 0.77465 1.19477 1.21003 1.21006 1.21219 0.94314 0.89150 1.49875 0.90645 1.19246 0.94185 0.90657 0.99446 1.22020 0.91088 0.83465 0.73132 1.90536 1.18088 1.84707 1.48961 1.46329 1.09496 1.06049 1.78713 1.21144 0.92478 0.84962 1.01778 1.21859 0.98156 0.93504 1.03148 1.24298 0.99346 0.94860 0.98545 1.24084 1.02496 0.81384 0.95976 1.89674 1.60250 1.27608 1.52954 1.23997 0.93772 0.93171 0.92915 0.92975 0.93482 0.93466 0.77115 0.92238 0.92227 0.90656 0.90889 0.87628 0.89023 0.89892 0.90058 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.81 8.92 -34.44 -0.31 -15.12 16 8 H 0.08 2.31 6.75 -52.49 -0.35 1.95 16 9 C 0.00 0.10 5.46 -29.04 -0.16 -0.06 16 10 C 0.51 11.68 7.82 -10.99 -0.09 11.60 16 11 O -0.55 -14.39 15.46 5.55 0.09 -14.31 16 12 N -0.75 -12.53 5.56 -60.30 -0.33 -12.87 16 13 C 0.12 1.66 5.67 -4.05 -0.02 1.64 16 14 C -0.13 -1.22 5.18 -26.73 -0.14 -1.35 16 15 C -0.15 -1.34 3.88 -89.54 -0.35 -1.68 16 16 C 0.04 0.35 8.78 37.61 0.33 0.68 16 17 O -0.39 -4.36 12.45 -35.23 -0.44 -4.80 16 18 C 0.04 0.32 8.79 37.61 0.33 0.65 16 19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 20 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 21 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 22 H 0.40 5.48 8.47 -40.82 -0.35 5.13 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 27 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.71 7.93 -51.93 -0.41 0.29 16 30 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 270.14 15.07 4.07 4.07 Total: -1.00 -33.57 270.14 -5.86 -39.43 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.46 Total: -0.72 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -0.50 Total: -2.21 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.40 Total: -38.62 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.35 Total: -19.11 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.57 -5.86 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.152 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds