Wall clock time and date at job start Sun Mar 29 2020 22:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00041 * 2 1 4 4 H 1.48491 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 300.00195 * 3 2 1 6 6 H 1.48503 * 109.47077 * 59.99848 * 3 2 1 7 7 C 1.37872 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00552 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47505 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99847 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00297 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00046 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47115 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47376 * 179.97438 * 14 13 12 16 16 C 1.54033 * 113.92511 * 86.59699 * 15 14 13 17 17 O 1.44180 * 85.51695 * 136.81940 * 16 15 14 18 18 C 1.44178 * 93.33776 * 335.80740 * 17 16 15 19 19 H 0.96997 * 119.99886 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.46963 * 59.99627 * 9 7 2 21 21 H 1.08999 * 109.47222 * 300.00170 * 9 7 2 22 22 H 0.96998 * 119.99831 * 0.02562 * 12 10 9 23 23 H 1.08998 * 109.47456 * 60.00087 * 13 12 10 24 24 H 1.09003 * 109.47019 * 299.99629 * 13 12 10 25 25 H 1.09002 * 109.47521 * 59.99865 * 14 13 12 26 26 H 1.08999 * 109.47210 * 300.00059 * 14 13 12 27 27 H 1.09002 * 112.99937 * 314.66561 * 15 14 13 28 28 H 1.08997 * 113.86582 * 250.96654 * 16 15 14 29 29 H 1.09004 * 113.86499 * 22.67175 * 16 15 14 30 30 H 1.09003 * 113.86222 * 270.03964 * 18 17 16 31 31 H 1.09000 * 113.98005 * 138.36086 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7811 -4.9153 0.0011 13 6 2.7331 -6.0288 0.0016 14 6 1.9681 -7.3538 0.0015 15 6 2.9623 -8.5168 0.0014 16 6 3.4317 -8.9374 1.4069 17 8 3.2544 -10.2892 0.9381 18 6 2.2967 -9.9041 -0.0685 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 0.8274 -5.0926 0.0011 23 1 3.3596 -5.9707 0.8916 24 1 3.3597 -5.9715 -0.8884 25 1 1.3418 -7.4117 -0.8887 26 1 1.3410 -7.4114 0.8912 27 1 3.7752 -8.3821 -0.7121 28 1 4.4682 -8.6775 1.6218 29 1 2.7450 -8.6536 2.2045 30 1 1.2635 -9.9156 0.2785 31 1 2.4311 -10.4101 -1.0245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:02 Heat of formation + Delta-G solvation = -92.618945 kcal Electronic energy + Delta-G solvation = -13647.187032 eV Core-core repulsion = 11121.306091 eV Total energy + Delta-G solvation = -2525.880941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32899 -40.34255 -36.37685 -35.08969 -33.24009 -31.03137 -28.46396 -27.40375 -25.67041 -23.40634 -21.63296 -20.78570 -18.53386 -17.74164 -17.33212 -17.10519 -16.70081 -16.33691 -16.20360 -15.94957 -15.07454 -14.52323 -14.19041 -13.60792 -13.56576 -13.25371 -12.91199 -12.78570 -12.57053 -12.27689 -12.05658 -11.61665 -11.45048 -11.42466 -10.64169 -10.62822 -10.47060 -9.96608 -8.25490 -6.32533 1.39876 1.40744 1.55675 1.89884 2.34495 2.53016 2.79913 3.09977 3.27968 3.85145 4.05772 4.24176 4.29962 4.44941 4.46802 4.53352 4.67574 4.68913 4.95423 5.05771 5.10862 5.18013 5.21608 5.27712 5.31550 5.59982 5.74918 6.06774 6.72904 6.85622 7.34188 7.53457 8.86883 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.093143 B = 0.004656 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.541399 B = 6011.666899 C = 6187.372181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.006 3.994 10 C 0.515 3.485 11 O -0.589 6.589 12 N -0.727 5.727 13 C 0.118 3.882 14 C -0.114 4.114 15 C -0.147 4.147 16 C 0.031 3.969 17 O -0.415 6.415 18 C 0.041 3.959 19 H 0.267 0.733 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.412 0.588 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -17.338 0.025 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.072 0.928 9 C -0.033 4.033 10 C 0.304 3.696 11 O -0.469 6.469 12 N -0.381 5.381 13 C -0.005 4.005 14 C -0.151 4.151 15 C -0.166 4.166 16 C -0.045 4.045 17 O -0.334 6.334 18 C -0.035 4.035 19 H 0.076 0.924 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.249 0.751 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.191 -17.338 0.102 17.379 hybrid contribution -0.079 1.058 -0.038 1.061 sum 1.113 -16.280 0.065 16.319 Atomic orbital electron populations 1.70034 1.07102 1.28037 1.51296 1.25784 0.95856 1.02734 0.94485 0.85408 0.78576 0.78874 0.78256 1.20047 1.19703 1.19717 1.21418 0.93673 0.91416 1.51065 0.92820 1.19095 0.94334 0.90976 0.98942 1.21479 0.89777 0.84924 0.73382 1.90513 1.19357 1.85654 1.51353 1.46025 1.11062 1.04856 1.76129 1.21349 0.92345 0.85760 1.01061 1.21770 0.97974 0.90798 1.04605 1.24235 0.99257 0.94907 0.98233 1.24229 1.02950 0.80755 0.96588 1.89652 1.61232 1.28649 1.53882 1.24182 0.94045 0.92308 0.93008 0.92378 0.93870 0.93849 0.75130 0.92996 0.93057 0.89100 0.89523 0.87781 0.88994 0.88984 0.88493 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.29 21.45 0.28 -53.72 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -31.89 8.92 25.60 0.23 -31.66 16 8 H 0.05 3.37 6.75 -2.91 -0.02 3.35 16 9 C 0.01 0.31 5.46 29.10 0.16 0.47 16 10 C 0.52 23.53 7.82 87.66 0.69 24.22 16 11 O -0.59 -31.51 15.46 -3.05 -0.05 -31.56 16 12 N -0.73 -23.32 5.56 -463.07 -2.57 -25.89 16 13 C 0.12 3.08 5.67 86.38 0.49 3.57 16 14 C -0.11 -1.83 5.18 30.59 0.16 -1.67 16 15 C -0.15 -2.28 3.88 -10.10 -0.04 -2.31 16 16 C 0.03 0.53 8.78 72.27 0.63 1.17 16 17 O -0.41 -8.71 12.45 -148.98 -1.86 -10.57 16 18 C 0.04 0.58 8.79 72.27 0.63 1.21 16 19 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 20 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 21 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.41 10.54 8.47 -92.71 -0.79 9.76 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 1.22 7.88 -2.39 -0.02 1.20 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 30 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.96 270.14 1.58 -70.38 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.33 Total: 7.93 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 3.41 Total: -3.98 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.29 Total: -79.61 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.90 Total: -42.12 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.96 1.58 -70.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.244 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds