Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.62968 * 328.09529 * 13 12 10 15 15 C 1.54372 * 110.69900 * 91.37939 * 13 12 10 16 16 O 1.45942 * 105.06963 * 100.56904 * 15 13 12 17 17 C 1.34567 * 108.40305 * 32.43750 * 16 15 13 18 18 O 1.20830 * 125.94146 * 146.64628 * 17 16 15 19 19 C 1.51506 * 108.11179 * 326.66664 * 17 16 15 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 24 24 H 1.09004 * 110.32179 * 219.46455 * 15 13 12 25 25 H 1.08998 * 110.32211 * 341.66871 * 15 13 12 26 26 H 1.09000 * 110.40336 * 261.59079 * 19 17 16 27 27 H 1.08994 * 110.50289 * 139.21787 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0010 11 8 3.2257 -3.5367 0.0000 12 7 5.3389 -2.8612 0.0009 13 6 5.8272 -4.2424 0.0002 14 1 5.1387 -4.8934 0.5390 15 6 6.0419 -4.7445 -1.4437 16 8 7.4789 -4.6351 -1.6737 17 6 8.1138 -4.8562 -0.5080 18 8 9.1902 -5.3892 -0.3766 19 6 7.2438 -4.3211 0.6110 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 5.9692 -2.1239 0.0013 24 1 5.7218 -5.7825 -1.5350 25 1 5.4968 -4.1161 -2.1480 26 1 7.5822 -3.3305 0.9149 27 1 7.2537 -5.0026 1.4615 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203413.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = -117.470001 kcal Electronic energy + Delta-G solvation = -13833.475550 eV Core-core repulsion = 11170.683891 eV Total energy + Delta-G solvation = -2662.791658 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.17504 -38.92258 -37.55768 -34.73013 -32.94113 -31.27521 -29.48844 -27.99041 -23.83466 -21.78177 -21.51953 -19.90992 -17.37462 -17.29855 -16.94621 -16.64301 -15.84294 -15.34570 -14.59201 -14.25161 -13.97411 -13.67025 -13.20390 -12.71996 -12.34025 -12.25773 -11.95874 -11.57053 -10.99526 -10.88850 -10.66378 -10.51191 -10.06211 -9.36164 -9.02719 -8.90403 -8.65229 -6.10758 -4.11542 1.68973 3.17365 3.20153 3.25638 3.29603 3.32006 3.37859 3.83184 4.13821 4.33661 4.46675 4.78165 5.03241 5.19810 5.28782 5.41814 5.51275 5.94076 6.46549 6.48603 6.64329 6.79671 7.18644 7.42277 7.87952 8.45592 8.86272 9.08357 9.46857 11.02076 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.063154 B = 0.006404 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.254734 B = 4371.428862 C = 4583.049137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.093 0.907 9 C -0.029 4.029 10 C 0.524 3.476 11 O -0.527 6.527 12 N -0.742 5.742 13 C 0.115 3.885 14 H 0.121 0.879 15 C 0.041 3.959 16 O -0.352 6.352 17 C 0.487 3.513 18 O -0.453 6.453 19 C -0.194 4.194 20 H 0.265 0.735 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.399 0.601 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 -5.130 0.278 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.110 0.890 9 C -0.069 4.069 10 C 0.314 3.686 11 O -0.400 6.400 12 N -0.398 5.398 13 C 0.008 3.992 14 H 0.139 0.861 15 C -0.034 4.034 16 O -0.270 6.270 17 C 0.327 3.673 18 O -0.336 6.336 19 C -0.233 4.233 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.234 0.766 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.605 -5.893 0.137 14.827 hybrid contribution 0.609 1.382 0.067 1.511 sum 14.214 -4.511 0.204 14.914 Atomic orbital electron populations 1.69889 1.06206 1.26946 1.50311 1.24980 0.94807 0.98783 0.94670 0.86879 0.80261 0.84031 0.78599 1.20103 1.21091 1.19133 1.20973 0.87571 0.95746 1.51190 0.88951 1.19702 0.99752 0.88685 0.98744 1.21555 0.80051 0.93781 0.73251 1.90602 1.54988 1.46892 1.47555 1.46422 1.08521 1.06013 1.78801 1.21958 0.94729 0.87432 0.95047 0.86108 1.24745 0.76151 1.03652 0.98864 1.87304 1.21795 1.83375 1.34519 1.23210 0.85328 0.74321 0.84420 1.90708 1.21166 1.36987 1.84698 1.23236 0.94793 1.05762 0.99517 0.92493 0.93402 0.93814 0.76590 0.88848 0.86330 0.86038 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.29 15 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 20.11 27.47 -169.99 -4.67 15.44 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -5.64 6.54 56.52 0.37 -5.27 15 7 C -0.52 -14.42 9.48 -34.44 -0.33 -14.75 15 8 H 0.09 2.94 7.00 -52.49 -0.37 2.57 15 9 C -0.03 -0.63 4.53 -29.03 -0.13 -0.76 15 10 C 0.52 10.12 7.82 -10.98 -0.09 10.03 15 11 O -0.53 -12.18 15.10 5.56 0.08 -12.10 15 12 N -0.74 -9.89 5.07 -52.36 -0.27 -10.15 15 13 C 0.12 1.27 3.56 -66.44 -0.24 1.03 15 14 H 0.12 1.42 7.55 -51.93 -0.39 1.02 15 15 C 0.04 0.44 7.59 37.88 0.29 0.73 15 16 O -0.35 -4.33 11.17 -39.75 -0.44 -4.77 15 17 C 0.49 5.77 8.50 36.40 0.31 6.08 15 18 O -0.45 -6.75 18.00 -18.32 -0.33 -7.08 15 19 C -0.19 -1.71 6.72 -26.72 -0.18 -1.89 15 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.05 0.98 7.20 -51.93 -0.37 0.61 15 22 H 0.04 0.88 7.57 -51.93 -0.39 0.49 15 23 H 0.40 4.26 8.39 -40.82 -0.34 3.92 15 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.12 1.36 8.02 -51.93 -0.42 0.94 15 26 H 0.12 0.90 7.71 -51.93 -0.40 0.50 15 27 H 0.12 0.86 8.14 -51.93 -0.42 0.43 15 LS Contribution 243.22 15.07 3.67 3.67 Total: -1.00 -33.87 243.22 -4.34 -38.22 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -2.70 Total: 0.73 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.46 Total: 2.34 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.51 Total: -36.45 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.69 Total: -23.95 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.87 -4.34 -38.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203413.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.253 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds