Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.62968 * 328.09529 * 13 12 10 15 15 C 1.54372 * 110.69900 * 91.37939 * 13 12 10 16 16 O 1.45942 * 105.06963 * 100.56904 * 15 13 12 17 17 C 1.34567 * 108.40305 * 32.43750 * 16 15 13 18 18 O 1.20830 * 125.94146 * 146.64628 * 17 16 15 19 19 C 1.51506 * 108.11179 * 326.66664 * 17 16 15 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 24 24 H 1.09004 * 110.32179 * 219.46455 * 15 13 12 25 25 H 1.08998 * 110.32211 * 341.66871 * 15 13 12 26 26 H 1.09000 * 110.40336 * 261.59079 * 19 17 16 27 27 H 1.08994 * 110.50289 * 139.21787 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0010 11 8 3.2257 -3.5367 0.0000 12 7 5.3389 -2.8612 0.0009 13 6 5.8272 -4.2424 0.0002 14 1 5.1387 -4.8934 0.5390 15 6 6.0419 -4.7445 -1.4437 16 8 7.4789 -4.6351 -1.6737 17 6 8.1138 -4.8562 -0.5080 18 8 9.1902 -5.3892 -0.3766 19 6 7.2438 -4.3211 0.6110 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 5.9692 -2.1239 0.0013 24 1 5.7218 -5.7825 -1.5350 25 1 5.4968 -4.1161 -2.1480 26 1 7.5822 -3.3305 0.9149 27 1 7.2537 -5.0026 1.4615 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203413.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = -143.780338 kcal Electronic energy + Delta-G solvation = -13834.616451 eV Core-core repulsion = 11170.683891 eV Total energy + Delta-G solvation = -2663.932560 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.13732 -40.33878 -38.61896 -35.92742 -34.98080 -32.59252 -31.10787 -28.92123 -25.59167 -22.95373 -22.46928 -21.28107 -19.03453 -18.43751 -18.13953 -17.59233 -17.34014 -16.65037 -16.04417 -15.92294 -15.01994 -14.91951 -14.63167 -14.11348 -13.70148 -13.45479 -13.04405 -12.79271 -12.72529 -12.36733 -11.94456 -11.81096 -11.49761 -11.47685 -10.76514 -10.59646 -10.11835 -8.23582 -6.31871 0.78152 1.42925 1.46326 1.56345 1.81957 2.18837 2.30225 2.40801 2.96578 3.10484 3.27058 3.57629 4.00555 4.23305 4.32961 4.53940 4.71256 4.72609 4.78868 5.10815 5.44742 5.52127 5.60879 6.25088 6.28127 6.65972 6.87236 7.28460 7.47174 8.93817 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.063154 B = 0.006404 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.254734 B = 4371.428862 C = 4583.049137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.226 1.226 7 C -0.533 4.533 8 H 0.031 0.969 9 C -0.032 4.032 10 C 0.528 3.472 11 O -0.576 6.576 12 N -0.716 5.716 13 C 0.113 3.887 14 H 0.117 0.883 15 C 0.043 3.957 16 O -0.366 6.366 17 C 0.490 3.510 18 O -0.488 6.488 19 C -0.174 4.174 20 H 0.267 0.733 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.417 0.583 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.146 0.854 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.528 -3.817 0.747 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.149 1.149 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.071 4.071 10 C 0.317 3.683 11 O -0.454 6.454 12 N -0.371 5.371 13 C 0.007 3.993 14 H 0.135 0.865 15 C -0.032 4.032 16 O -0.284 6.284 17 C 0.332 3.668 18 O -0.373 6.373 19 C -0.212 4.212 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.255 0.745 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.164 0.836 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.413 -4.588 0.604 17.052 hybrid contribution -0.279 0.869 -0.115 0.920 sum 16.134 -3.718 0.489 16.564 Atomic orbital electron populations 1.70095 1.08856 1.28323 1.52282 1.26134 0.95724 1.03895 0.93869 0.85558 0.79932 0.76987 0.79427 1.18959 1.21660 1.14856 1.21210 0.91186 0.93653 1.51038 0.95034 1.19636 0.95605 0.91107 1.00784 1.21109 0.81658 0.92354 0.73209 1.90599 1.56831 1.47797 1.50184 1.46017 1.06621 1.07954 1.76547 1.22079 0.95963 0.85655 0.95610 0.86502 1.24764 0.75431 1.04645 0.98356 1.87293 1.22387 1.83284 1.35404 1.23594 0.84898 0.73340 0.84923 1.90699 1.22817 1.38661 1.85151 1.23180 0.91880 1.07463 0.98672 0.92438 0.90914 0.91225 0.74453 0.87154 0.87017 0.83619 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.77 13.96 21.45 0.30 -59.47 15 2 C 0.00 0.00 5.47 84.65 0.46 0.46 15 3 Si 0.96 40.27 27.47 68.60 1.88 42.15 15 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 5 H -0.29 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.23 -7.96 6.54 99.48 0.65 -7.31 15 7 C -0.53 -30.31 9.48 25.60 0.24 -30.06 15 8 H 0.03 2.12 7.00 -2.91 -0.02 2.10 15 9 C -0.03 -1.30 4.53 29.10 0.13 -1.17 15 10 C 0.53 19.62 7.82 87.66 0.69 20.30 15 11 O -0.58 -27.05 15.10 -3.03 -0.05 -27.09 15 12 N -0.72 -16.83 5.07 -437.97 -2.22 -19.05 15 13 C 0.11 2.17 3.56 45.96 0.16 2.34 15 14 H 0.12 2.49 7.55 -2.39 -0.02 2.47 15 15 C 0.04 0.84 7.59 72.45 0.55 1.39 15 16 O -0.37 -8.19 11.17 -55.12 -0.62 -8.81 15 17 C 0.49 10.38 8.50 71.49 0.61 10.98 15 18 O -0.49 -13.72 18.00 21.54 0.39 -13.33 15 19 C -0.17 -2.38 6.72 30.60 0.21 -2.17 15 20 H 0.27 15.45 8.31 -92.71 -0.77 14.68 15 21 H 0.07 2.67 7.20 -2.39 -0.02 2.65 15 22 H 0.07 2.54 7.57 -2.39 -0.02 2.53 15 23 H 0.42 6.98 8.39 -92.71 -0.78 6.21 15 24 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.11 2.38 8.02 -2.39 -0.02 2.36 15 26 H 0.15 1.40 7.71 -2.39 -0.02 1.38 15 27 H 0.14 1.43 8.14 -2.39 -0.02 1.41 15 Total: -1.00 -77.96 243.22 3.10 -74.86 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.37 Total: 8.68 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 3.05 Total: 2.07 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.92 Total: -78.52 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.27 Total: -49.23 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.88 Total: 42.15 kcal Total: -77.96 3.10 -74.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203413.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.925 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds