Wall clock time and date at job start Sun Mar 29 2020 21:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31746 * 120.13541 * 2 1 4 4 N 1.28300 * 122.29533 * 179.69583 * 3 2 1 5 5 C 1.32180 * 122.40934 * 0.60129 * 4 3 2 6 6 Cl 1.73594 * 120.04198 * 179.68737 * 5 4 3 7 7 C 1.38417 * 119.91578 * 359.70373 * 5 4 3 8 8 C 1.39566 * 120.13524 * 180.28019 * 2 1 3 9 9 N 1.39007 * 121.10480 * 359.97438 * 8 2 1 10 10 C 1.36862 * 120.00075 * 180.02562 * 9 8 2 11 11 H 1.07999 * 119.99999 * 0.02562 * 10 9 8 12 12 C 1.38837 * 120.00022 * 180.02562 * 10 9 8 13 13 N 1.31560 * 120.00017 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47458 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47417 * 119.99913 * 14 12 10 17 17 H 1.48497 * 109.47018 * 239.99598 * 14 12 10 18 18 H 1.09001 * 109.46953 * 269.72050 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.71648 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.72279 * 1 2 3 21 21 H 1.08001 * 121.07526 * 179.97438 * 7 5 4 22 22 H 0.97004 * 119.99823 * 0.02562 * 9 8 2 23 23 H 0.97004 * 119.99923 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1685 1.1394 0.0000 4 7 3.4506 1.1878 0.0058 5 6 4.2006 0.0994 0.0004 6 17 5.9311 0.2365 0.0005 7 6 3.6044 -1.1498 -0.0057 8 6 2.2077 -1.2070 -0.0059 9 7 1.5389 -2.4256 -0.0113 10 6 2.2487 -3.5958 -0.0165 11 1 3.3284 -3.5724 -0.0160 12 6 1.5807 -4.8128 -0.0225 13 7 0.2654 -4.8413 -0.0226 14 14 2.5495 -6.4100 -0.0289 15 1 4.0033 -6.1072 -0.0270 16 1 2.2068 -7.2017 1.1798 17 1 2.2086 -7.1908 -1.2451 18 1 -0.3633 -0.0050 1.0277 19 1 -0.3634 0.8925 -0.5094 20 1 -0.3633 -0.8875 -0.5181 21 1 4.1991 -2.0513 -0.0105 22 1 0.5691 -2.4466 -0.0114 23 1 -0.2013 -5.6917 -0.0272 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530969.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:53 Heat of formation + Delta-G solvation = 20.197243 kcal Electronic energy + Delta-G solvation = -11689.493697 eV Core-core repulsion = 9369.840559 eV Total energy + Delta-G solvation = -2319.653137 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.58206 -38.10485 -37.59610 -34.69629 -33.77985 -31.59570 -28.77690 -27.36272 -23.98360 -23.61655 -20.42413 -18.85918 -17.94364 -16.70381 -16.28695 -16.14743 -15.58376 -15.35095 -14.07282 -14.04692 -13.64303 -13.61788 -13.24629 -12.74409 -12.63252 -12.46355 -12.27753 -12.12565 -11.69853 -11.04688 -10.37811 -10.27967 -9.21805 -8.76125 -6.00487 0.18146 0.31386 0.86511 1.42437 1.45631 1.55502 2.14195 2.63349 2.96337 3.07315 3.65518 3.83481 4.21839 4.29603 4.56660 4.77238 4.90473 5.01442 5.10881 5.36542 5.41984 5.63124 6.52281 7.01451 7.23125 8.11613 8.38622 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.030758 B = 0.010199 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.112608 B = 2744.574139 C = 3639.542944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.019 4.019 3 N -0.221 5.221 4 N -0.376 5.376 5 C 0.162 3.838 6 Cl -0.026 7.026 7 C -0.263 4.263 8 C 0.166 3.834 9 N -0.509 5.509 10 C -0.329 4.329 11 H 0.113 0.887 12 C -0.005 4.005 13 N -0.895 5.895 14 Si 1.002 2.998 15 H -0.257 1.257 16 H -0.272 1.272 17 H -0.273 1.273 18 H 0.084 0.916 19 H 0.091 0.909 20 H 0.069 0.931 21 H 0.143 0.857 22 H 0.408 0.592 23 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 0.207 0.026 2.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.180 4.180 3 N -0.059 5.059 4 N -0.225 5.225 5 C -0.004 4.004 6 Cl 0.001 6.999 7 C -0.300 4.300 8 C 0.031 3.969 9 N -0.110 5.110 10 C -0.460 4.460 11 H 0.131 0.869 12 C -0.209 4.209 13 N -0.530 5.530 14 Si 0.824 3.176 15 H -0.180 1.180 16 H -0.198 1.198 17 H -0.198 1.198 18 H 0.103 0.897 19 H 0.110 0.890 20 H 0.088 0.912 21 H 0.161 0.839 22 H 0.245 0.755 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.357 1.445 0.028 2.765 hybrid contribution 0.169 -2.312 -0.010 2.318 sum 2.526 -0.867 0.018 2.671 Atomic orbital electron populations 1.20455 0.86288 1.03695 1.03609 1.22612 0.99440 0.88602 1.07351 1.72400 1.00722 1.24313 1.08423 1.72507 0.99123 1.25786 1.25090 1.22932 0.87842 0.91792 0.97839 1.98322 1.06466 1.98484 1.96578 1.21000 0.93322 0.97260 1.18437 1.18568 0.92093 0.87175 0.99023 1.41180 1.08966 1.01941 1.58878 1.20291 0.93887 0.83035 1.48784 0.86893 1.26330 0.96768 1.03045 0.94800 1.69721 1.08174 1.30028 1.45066 0.84704 0.78674 0.75890 0.78318 1.18017 1.19767 1.19778 0.89704 0.89047 0.91187 0.83931 0.75473 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.62 9.80 71.24 0.70 -1.92 14 2 C -0.02 -0.80 6.89 42.89 0.30 -0.50 14 3 N -0.22 -9.67 11.41 -47.13 -0.54 -10.21 14 4 N -0.38 -16.88 11.48 -50.01 -0.57 -17.46 14 5 C 0.16 6.78 7.36 84.68 0.62 7.41 14 6 Cl -0.03 -0.91 29.13 -2.72 -0.08 -0.99 14 7 C -0.26 -11.27 9.23 22.69 0.21 -11.06 14 8 C 0.17 7.23 6.65 38.70 0.26 7.49 14 9 N -0.51 -22.65 5.34 -183.56 -0.98 -23.63 14 10 C -0.33 -15.13 9.58 84.05 0.81 -14.32 14 11 H 0.11 5.03 5.80 -2.91 -0.02 5.01 14 12 C 0.00 -0.20 5.50 84.88 0.47 0.27 14 13 N -0.90 -41.87 13.05 21.65 0.28 -41.59 14 14 Si 1.00 35.52 29.55 68.60 2.03 37.55 14 15 H -0.26 -8.78 7.11 99.48 0.71 -8.08 14 16 H -0.27 -9.52 7.11 99.48 0.71 -8.82 14 17 H -0.27 -9.53 7.11 99.48 0.71 -8.82 14 18 H 0.08 2.46 8.14 -2.39 -0.02 2.44 14 19 H 0.09 2.58 8.14 -2.39 -0.02 2.57 14 20 H 0.07 2.18 6.65 -2.39 -0.02 2.17 14 21 H 0.14 5.87 6.17 -2.91 -0.02 5.85 14 22 H 0.41 17.82 6.03 -92.71 -0.56 17.26 14 23 H 0.29 12.56 8.31 -92.71 -0.77 11.79 14 Total: -1.00 -51.80 225.56 4.19 -47.61 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.70 Total: 21.37 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.36 Total: -12.64 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -1.81 Total: -92.89 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -51.80 4.19 -47.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530969.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.803 kcal (2) G-P(sol) polarization free energy of solvation -51.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds