Wall clock time and date at job start Sun Mar 29 2020 21:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86794 * 120.00406 * 2 1 4 4 H 1.48491 * 109.47447 * 240.00469 * 3 2 1 5 5 H 1.48504 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47413 * 119.99997 * 3 2 1 7 7 C 1.38767 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36872 * 119.99973 * 0.27474 * 7 2 1 10 10 C 1.38994 * 120.00155 * 179.72332 * 9 7 2 11 11 N 1.32462 * 119.63129 * 359.72752 * 10 9 7 12 12 C 1.31846 * 121.70363 * 179.71093 * 11 10 9 13 13 C 1.38859 * 120.78232 * 0.56751 * 12 11 10 14 14 N 1.39836 * 120.40241 * 179.74969 * 13 12 11 15 15 C 1.39422 * 119.19739 * 359.72239 * 13 12 11 16 16 C 1.38355 * 118.43750 * 0.02562 * 15 13 12 17 17 Cl 1.73592 * 120.42753 * 180.02562 * 16 15 13 18 18 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 19 19 H 0.97000 * 120.00345 * 359.72571 * 9 7 2 20 20 H 1.08004 * 119.61044 * 180.28707 * 12 11 10 21 21 H 0.96999 * 119.99886 * 179.97438 * 14 13 12 22 22 H 0.96996 * 119.99584 * 359.97438 * 14 13 12 23 23 H 1.08001 * 120.78060 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 3.1038 1.6963 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0098 -1.2018 -0.0005 8 1 3.0898 -1.2018 -0.0010 9 7 1.3254 -2.3871 -0.0068 10 6 2.0203 -3.5909 -0.0131 11 7 3.3448 -3.5824 -0.0186 12 6 4.0449 -4.6997 -0.0190 13 6 3.4113 -5.9353 -0.0256 14 7 4.1616 -7.1153 -0.0313 15 6 2.0179 -5.9851 -0.0258 16 6 1.3160 -4.7929 -0.0200 17 17 -0.4199 -4.7947 -0.0193 18 1 -0.4850 0.8401 0.0004 19 1 0.3554 -2.3871 -0.0068 20 1 5.1239 -4.6534 -0.0189 21 1 3.7129 -7.9753 -0.0355 22 1 5.1306 -7.0738 -0.0311 23 1 1.4988 -6.9322 -0.0304 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533431.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:30 Heat of formation + Delta-G solvation = 31.205015 kcal Electronic energy + Delta-G solvation = -11631.048082 eV Core-core repulsion = 9311.872278 eV Total energy + Delta-G solvation = -2319.175805 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.21088 -35.86544 -35.46809 -33.55531 -31.46527 -30.64711 -27.11443 -24.60536 -22.62512 -21.26865 -18.05850 -16.90772 -16.31532 -16.12051 -14.63099 -14.28025 -13.75250 -13.67379 -13.34292 -12.75634 -11.94987 -11.47770 -11.47386 -11.28813 -10.85747 -10.62480 -10.40422 -10.06010 -9.62660 -8.56060 -8.48859 -8.24002 -6.48985 -6.38427 -3.63469 2.01513 2.46602 3.04456 3.22816 3.24813 3.26466 4.11313 4.51602 4.66062 4.94649 5.28727 5.57424 5.62862 6.15335 6.18757 6.68641 6.71848 7.13870 7.50665 7.83060 8.09849 8.32063 8.72792 8.97930 9.34808 9.74479 10.67312 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.009917 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.812319 B = 2822.788017 C = 3567.754552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.281 4.281 8 H 0.112 0.888 9 N -0.531 5.531 10 C 0.341 3.659 11 N -0.507 5.507 12 C 0.109 3.891 13 C 0.032 3.968 14 N -0.890 5.890 15 C -0.079 4.079 16 C -0.163 4.163 17 Cl -0.091 7.091 18 H 0.275 0.725 19 H 0.410 0.590 20 H 0.139 0.861 21 H 0.386 0.614 22 H 0.389 0.611 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -9.073 -0.037 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.189 4.189 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.412 4.412 8 H 0.130 0.870 9 N -0.140 5.140 10 C 0.097 3.903 11 N -0.226 5.226 12 C -0.059 4.059 13 C -0.074 4.074 14 N -0.435 5.435 15 C -0.109 4.109 16 C -0.201 4.201 17 Cl -0.063 7.063 18 H 0.085 0.915 19 H 0.248 0.752 20 H 0.156 0.844 21 H 0.213 0.787 22 H 0.216 0.784 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.978 -7.624 -0.037 8.600 hybrid contribution -0.479 -0.383 -0.006 0.613 sum 3.498 -8.007 -0.044 8.738 Atomic orbital electron populations 1.69704 1.06005 1.28605 1.48830 1.25378 0.95765 1.00035 0.97709 0.85812 0.78682 0.80049 0.79117 1.19778 1.20908 1.19776 1.19889 0.93730 0.82061 1.45520 0.87042 1.40979 1.08315 1.01507 1.63217 1.17809 0.87868 0.85371 0.99287 1.67249 1.05338 1.28991 1.21055 1.21884 0.98715 0.86090 0.99187 1.18027 0.90392 0.88019 1.10925 1.41784 1.07263 1.04370 1.90127 1.20291 0.91858 0.96150 1.02626 1.20571 0.83146 0.94043 1.22369 1.98274 1.11715 1.98655 1.97682 0.91534 0.75208 0.84357 0.78732 0.78435 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 13.05 55.49 0.72 -24.01 14 2 C 0.01 0.38 5.50 -17.45 -0.10 0.28 14 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 14 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 14 7 C -0.28 -7.70 9.70 -15.11 -0.15 -7.84 14 8 H 0.11 3.04 7.07 -52.49 -0.37 2.67 14 9 N -0.53 -14.02 5.38 -11.12 -0.06 -14.08 14 10 C 0.34 8.22 7.43 -154.91 -1.15 7.07 14 11 N -0.51 -11.73 9.08 -12.20 -0.11 -11.84 14 12 C 0.11 2.06 11.05 -17.32 -0.19 1.87 14 13 C 0.03 0.55 6.79 -83.54 -0.57 -0.01 14 14 N -0.89 -11.03 9.10 32.53 0.30 -10.74 14 15 C -0.08 -1.43 9.84 -39.10 -0.38 -1.82 14 16 C -0.16 -3.46 6.36 -39.14 -0.25 -3.71 14 17 Cl -0.09 -1.80 27.61 -51.86 -1.43 -3.23 14 18 H 0.27 7.17 8.31 -40.82 -0.34 6.83 14 19 H 0.41 10.91 6.54 -40.82 -0.27 10.64 14 20 H 0.14 2.15 8.06 -52.48 -0.42 1.73 14 21 H 0.39 4.05 8.86 -40.82 -0.36 3.69 14 22 H 0.39 3.98 8.85 -40.82 -0.36 3.61 14 23 H 0.12 1.87 8.06 -52.49 -0.42 1.45 14 LS Contribution 227.51 15.07 3.43 3.43 Total: -1.00 -28.86 227.51 -6.30 -35.17 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -1.34 Total: 13.73 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.79 Total: -4.17 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.85 Total: -60.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.43 Total: -3.23 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.86 -6.30 -35.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533431.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.371 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds