Wall clock time and date at job start Sun Mar 29 2020 21:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 120.00415 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99953 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00046 * 3 2 1 7 7 C 1.38815 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72306 * 7 2 1 9 9 N 1.36915 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.38875 * 119.99510 * 179.97438 * 9 7 2 11 11 C 1.38888 * 119.66801 * 359.97438 * 10 9 7 12 12 C 1.39182 * 119.02817 * 179.97438 * 11 10 9 13 13 N 1.39218 * 120.81641 * 180.02562 * 12 11 10 14 14 C 1.39613 * 118.36792 * 359.97438 * 12 11 10 15 15 C 1.38005 * 119.23457 * 0.02562 * 14 12 11 16 16 Cl 1.73601 * 119.54312 * 180.02562 * 15 14 12 17 17 N 1.32096 * 120.91450 * 359.72036 * 15 14 12 18 18 H 0.97000 * 119.99403 * 359.97438 * 1 2 3 19 19 H 0.96999 * 120.00262 * 359.97438 * 9 7 2 20 20 H 1.08007 * 120.48963 * 0.02562 * 11 10 9 21 21 H 0.96994 * 119.99733 * 0.02562 * 13 12 11 22 22 H 0.96998 * 119.99710 * 179.97438 * 13 12 11 23 23 H 1.07999 * 120.38087 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0097 -1.2022 0.0005 8 1 3.0897 -1.2022 -0.0040 9 7 1.3250 -2.3879 0.0005 10 6 2.0194 -3.5906 0.0005 11 6 3.4082 -3.5825 0.0000 12 6 4.0906 -4.7956 0.0005 13 7 5.4824 -4.8310 0.0006 14 6 3.3452 -5.9760 0.0022 15 6 1.9671 -5.9029 0.0026 16 17 1.0323 -7.3657 0.0053 17 7 1.3494 -4.7353 0.0071 18 1 -0.4849 0.8401 0.0004 19 1 0.3550 -2.3878 0.0005 20 1 3.9508 -2.6486 0.0000 21 1 5.9885 -4.0035 0.0006 22 1 5.9458 -5.6831 0.0013 23 1 3.8413 -6.9353 0.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533831.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:25 Heat of formation + Delta-G solvation = 26.014693 kcal Electronic energy + Delta-G solvation = -11544.069618 eV Core-core repulsion = 9224.668744 eV Total energy + Delta-G solvation = -2319.400874 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.16008 -36.07958 -35.56287 -34.15934 -31.83823 -28.98688 -28.30489 -25.02489 -22.20172 -21.31763 -18.10911 -17.23369 -16.47285 -15.21951 -14.89590 -14.56958 -13.80740 -13.71115 -13.54069 -13.10307 -11.81905 -11.70163 -11.39827 -11.11594 -11.01943 -10.62462 -10.45642 -10.29587 -9.80378 -8.72276 -8.55055 -7.39351 -7.07076 -6.66647 -3.89170 2.19006 2.57622 2.58099 3.10237 3.11331 3.15376 3.94877 4.33130 4.62777 4.95475 5.20268 5.99330 6.19749 6.23152 6.31043 6.81634 6.93459 7.20288 7.25238 7.69395 7.99438 8.19859 8.51832 8.84753 9.25609 9.62881 10.49659 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.040557 B = 0.008420 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.222246 B = 3324.586216 C = 4004.965368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.023 3.977 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.300 4.300 8 H 0.106 0.894 9 N -0.527 5.527 10 C 0.405 3.595 11 C -0.334 4.334 12 C 0.292 3.708 13 N -0.872 5.872 14 C -0.346 4.346 15 C 0.276 3.724 16 Cl -0.073 7.073 17 N -0.596 5.596 18 H 0.277 0.723 19 H 0.405 0.595 20 H 0.126 0.874 21 H 0.396 0.604 22 H 0.393 0.607 23 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.451 -6.229 -0.012 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.132 5.132 10 C 0.162 3.838 11 C -0.367 4.367 12 C 0.181 3.819 13 N -0.412 5.412 14 C -0.379 4.379 15 C 0.105 3.895 16 Cl -0.045 7.045 17 N -0.322 5.322 18 H 0.087 0.913 19 H 0.241 0.759 20 H 0.143 0.857 21 H 0.224 0.776 22 H 0.221 0.779 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.254 -5.732 -0.006 8.483 hybrid contribution 1.044 0.645 -0.006 1.227 sum 7.298 -5.087 -0.012 8.896 Atomic orbital electron populations 1.69717 1.06078 1.28757 1.47152 1.25386 0.95791 1.00069 0.96907 0.85689 0.79331 0.80560 0.78106 1.19097 1.20403 1.20402 1.19801 0.93098 0.82004 1.48151 0.87640 1.40828 1.08811 1.00993 1.62555 1.17526 0.87677 0.84689 0.93922 1.20416 0.93464 0.96449 1.26376 1.17336 0.83379 0.92833 0.88386 1.42203 1.03330 1.10260 1.85366 1.20185 0.91852 0.97010 1.28806 1.20417 0.87122 0.86621 0.95388 1.98321 1.75756 1.33678 1.96745 1.66148 1.40818 0.96417 1.28791 0.91293 0.75929 0.85654 0.77618 0.77937 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 13.05 55.49 0.72 -22.74 14 2 C 0.02 0.59 5.50 -17.45 -0.10 0.49 14 3 Si 0.94 19.34 29.55 -169.99 -5.02 14.31 14 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 14 6 H -0.28 -5.74 7.11 56.52 0.40 -5.33 14 7 C -0.30 -7.66 9.54 -15.07 -0.14 -7.80 14 8 H 0.11 2.54 5.65 -52.48 -0.30 2.24 14 9 N -0.53 -13.56 5.44 -11.19 -0.06 -13.62 14 10 C 0.41 9.79 7.61 -155.04 -1.18 8.61 14 11 C -0.33 -7.20 9.21 -38.99 -0.36 -7.55 14 12 C 0.29 5.40 6.81 -83.64 -0.57 4.83 14 13 N -0.87 -11.75 9.08 32.51 0.30 -11.46 14 14 C -0.35 -6.46 9.75 -39.15 -0.38 -6.84 14 15 C 0.28 5.74 7.26 -17.52 -0.13 5.61 14 16 Cl -0.07 -1.29 29.10 -51.86 -1.51 -2.80 14 17 N -0.60 -14.10 10.37 -9.63 -0.10 -14.20 14 18 H 0.28 6.90 8.31 -40.82 -0.34 6.56 14 19 H 0.40 10.86 8.01 -40.82 -0.33 10.53 14 20 H 0.13 2.63 5.93 -52.48 -0.31 2.32 14 21 H 0.40 4.68 8.86 -40.82 -0.36 4.32 14 22 H 0.39 4.24 8.86 -40.82 -0.36 3.88 14 23 H 0.12 1.87 8.06 -52.49 -0.42 1.44 14 LS Contribution 227.29 15.07 3.43 3.43 Total: -1.00 -27.66 227.29 -6.32 -33.98 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -1.22 Total: 15.74 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.86 Total: -2.65 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.86 Total: -62.01 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.51 Total: -2.80 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.66 -6.32 -33.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533831.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.997 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds