Wall clock time and date at job start Sun Mar 29 2020 21:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31979 * 120.04379 * 2 1 4 4 C 1.32334 * 120.07140 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.92070 * 180.02562 * 4 3 2 6 6 C 1.38473 * 120.16281 * 359.97438 * 4 3 2 7 7 N 1.32125 * 120.08961 * 359.74844 * 6 4 3 8 8 C 1.32797 * 119.92386 * 0.50695 * 7 6 4 9 9 N 1.38865 * 120.08057 * 179.77308 * 8 7 6 10 10 C 1.36895 * 120.00105 * 359.71963 * 9 8 7 11 11 H 1.08000 * 119.99393 * 359.72877 * 10 9 8 12 12 C 1.38811 * 120.00060 * 179.72814 * 10 9 8 13 13 N 1.31564 * 119.99730 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00229 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46986 * 89.99888 * 14 12 10 16 16 H 1.48492 * 109.47096 * 210.00150 * 14 12 10 17 17 H 1.48506 * 109.46749 * 330.00147 * 14 12 10 18 18 H 1.08991 * 109.47313 * 270.02223 * 1 2 3 19 19 H 1.08999 * 109.46981 * 30.02375 * 1 2 3 20 20 H 1.08998 * 109.46965 * 150.01837 * 1 2 3 21 21 H 1.07997 * 119.95837 * 180.02562 * 6 4 3 22 22 H 0.97005 * 120.00046 * 179.45513 * 9 8 7 23 23 H 0.97008 * 119.99482 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1425 0.0000 4 6 3.4912 1.1431 0.0005 5 17 4.3563 2.6481 0.0012 6 6 4.1875 -0.0538 0.0016 7 7 3.5325 -1.2012 0.0071 8 6 2.2045 -1.2060 0.0015 9 7 1.5128 -2.4101 0.0025 10 6 2.1999 -3.5942 0.0035 11 1 3.2798 -3.5917 -0.0009 12 6 1.5084 -4.7978 0.0103 13 7 2.1688 -5.9357 0.0108 14 14 -0.3596 -4.8019 0.0172 15 1 -0.8597 -4.8078 -1.3810 16 1 -0.8493 -6.0130 0.7233 17 1 -0.8546 -3.5880 0.7149 18 1 -0.3633 0.0004 1.0276 19 1 -0.3633 0.8898 -0.5142 20 1 -0.3633 -0.8901 -0.5135 21 1 5.2675 -0.0494 0.0024 22 1 0.5428 -2.4122 0.0064 23 1 1.6855 -6.7769 0.0151 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533836.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:03 Heat of formation + Delta-G solvation = 41.366110 kcal Electronic energy + Delta-G solvation = -11704.234267 eV Core-core repulsion = 9385.499081 eV Total energy + Delta-G solvation = -2318.735186 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.11160 -36.32562 -35.55024 -33.57265 -32.64570 -30.22784 -27.27680 -25.22100 -22.22063 -21.93195 -19.07639 -16.99988 -16.50339 -15.67072 -14.88120 -14.62469 -13.81609 -13.34457 -12.57530 -12.52148 -12.37275 -12.23691 -11.95137 -11.39170 -10.94740 -10.70657 -10.66237 -10.46834 -10.21964 -9.91417 -9.05731 -8.23733 -7.35498 -6.78452 -4.03077 1.67519 2.08727 2.65731 2.80674 2.86148 2.91487 3.73465 4.18622 4.34958 4.91622 5.05193 5.25789 5.41235 5.76521 5.90212 5.94710 6.18994 6.36318 6.84435 7.10709 7.64263 8.11402 8.29717 8.54142 8.86617 9.08900 10.30721 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.057664 B = 0.008395 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.458828 B = 3334.506695 C = 3804.813062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.009 4.009 3 N -0.394 5.394 4 C -0.029 4.029 5 Cl -0.070 7.070 6 C 0.148 3.852 7 N -0.495 5.495 8 C 0.306 3.694 9 N -0.526 5.526 10 C -0.288 4.288 11 H 0.135 0.865 12 C 0.043 3.957 13 N -0.848 5.848 14 Si 0.877 3.123 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.264 1.264 18 H 0.067 0.933 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.157 0.843 22 H 0.390 0.610 23 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 7.668 -0.024 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.167 4.167 3 N -0.109 5.109 4 C -0.197 4.197 5 Cl -0.043 7.043 6 C -0.022 4.022 7 N -0.218 5.218 8 C 0.060 3.940 9 N -0.133 5.133 10 C -0.419 4.419 11 H 0.152 0.848 12 C -0.165 4.165 13 N -0.482 5.482 14 Si 0.702 3.298 15 H -0.188 1.188 16 H -0.192 1.192 17 H -0.189 1.189 18 H 0.086 0.914 19 H 0.092 0.908 20 H 0.078 0.922 21 H 0.174 0.826 22 H 0.228 0.772 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.422 7.145 -0.020 7.544 hybrid contribution -1.118 -0.049 0.026 1.119 sum -3.540 7.096 0.006 7.930 Atomic orbital electron populations 1.20379 0.89456 1.02285 1.02077 1.20790 0.96283 0.86858 1.12741 1.66915 1.07787 1.29174 1.07032 1.21520 0.90205 0.86682 1.21258 1.98284 1.74099 1.34115 1.97810 1.22962 1.00300 0.86063 0.92904 1.68154 1.06756 1.26789 1.20079 1.18677 0.89393 0.86266 0.99709 1.41349 1.07104 1.03336 1.61512 1.19839 0.95781 0.80663 1.45575 0.84765 1.25187 0.99509 0.94935 0.96911 1.69677 1.36742 0.97721 1.44049 0.86654 0.84032 0.79409 0.79731 1.18755 1.19181 1.18894 0.91433 0.90771 0.92197 0.82611 0.77213 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.75 36.01 0.35 -0.98 14 2 C -0.01 -0.18 6.81 -82.13 -0.56 -0.74 14 3 N -0.39 -8.05 10.40 -6.23 -0.06 -8.11 14 4 C -0.03 -0.56 7.28 -17.25 -0.13 -0.68 14 5 Cl -0.07 -1.16 29.13 -51.86 -1.51 -2.67 14 6 C 0.15 2.89 11.00 -17.34 -0.19 2.70 14 7 N -0.49 -11.22 9.27 -12.20 -0.11 -11.33 14 8 C 0.31 6.80 7.41 -154.75 -1.15 5.65 14 9 N -0.53 -11.81 5.13 -11.06 -0.06 -11.87 14 10 C -0.29 -7.33 10.19 -15.08 -0.15 -7.48 14 11 H 0.13 3.80 7.32 -52.49 -0.38 3.42 14 12 C 0.04 1.05 5.50 -17.45 -0.10 0.96 14 13 N -0.85 -22.32 13.96 55.49 0.77 -21.55 14 14 Si 0.88 17.53 27.74 -169.99 -4.71 12.82 14 15 H -0.26 -5.15 7.11 56.52 0.40 -4.75 14 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 17 H -0.26 -4.85 6.52 56.52 0.37 -4.48 14 18 H 0.07 0.98 8.14 -51.93 -0.42 0.56 14 19 H 0.07 1.07 8.14 -51.93 -0.42 0.65 14 20 H 0.06 0.89 6.56 -51.93 -0.34 0.55 14 21 H 0.16 2.53 8.06 -52.49 -0.42 2.11 14 22 H 0.39 7.83 3.74 -40.82 -0.15 7.68 14 23 H 0.28 6.82 8.31 -40.82 -0.34 6.48 14 LS Contribution 224.59 15.07 3.38 3.38 Total: -1.00 -27.10 224.59 -5.54 -32.64 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -1.31 Total: 7.27 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.92 Total: -0.58 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.54 Total: -52.87 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -4.71 Total: 12.82 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.51 Total: -2.67 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -27.10 -5.54 -32.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533836.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.002 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds