Wall clock time and date at job start Sun Mar 29 2020 21:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31979 * 120.04379 * 2 1 4 4 C 1.32334 * 120.07140 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.92070 * 180.02562 * 4 3 2 6 6 C 1.38473 * 120.16281 * 359.97438 * 4 3 2 7 7 N 1.32125 * 120.08961 * 359.74844 * 6 4 3 8 8 C 1.32797 * 119.92386 * 0.50695 * 7 6 4 9 9 N 1.38865 * 120.08057 * 179.77308 * 8 7 6 10 10 C 1.36895 * 120.00105 * 359.71963 * 9 8 7 11 11 H 1.08000 * 119.99393 * 359.72877 * 10 9 8 12 12 C 1.38811 * 120.00060 * 179.72814 * 10 9 8 13 13 N 1.31564 * 119.99730 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00229 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46986 * 89.99888 * 14 12 10 16 16 H 1.48492 * 109.47096 * 210.00150 * 14 12 10 17 17 H 1.48506 * 109.46749 * 330.00147 * 14 12 10 18 18 H 1.08991 * 109.47313 * 270.02223 * 1 2 3 19 19 H 1.08999 * 109.46981 * 30.02375 * 1 2 3 20 20 H 1.08998 * 109.46965 * 150.01837 * 1 2 3 21 21 H 1.07997 * 119.95837 * 180.02562 * 6 4 3 22 22 H 0.97005 * 120.00046 * 179.45513 * 9 8 7 23 23 H 0.97008 * 119.99482 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1425 0.0000 4 6 3.4912 1.1431 0.0005 5 17 4.3563 2.6481 0.0012 6 6 4.1875 -0.0538 0.0016 7 7 3.5325 -1.2012 0.0071 8 6 2.2045 -1.2060 0.0015 9 7 1.5128 -2.4101 0.0025 10 6 2.1999 -3.5942 0.0035 11 1 3.2798 -3.5917 -0.0009 12 6 1.5084 -4.7978 0.0103 13 7 2.1688 -5.9357 0.0108 14 14 -0.3596 -4.8019 0.0172 15 1 -0.8597 -4.8078 -1.3810 16 1 -0.8493 -6.0130 0.7233 17 1 -0.8546 -3.5880 0.7149 18 1 -0.3633 0.0004 1.0276 19 1 -0.3633 0.8898 -0.5142 20 1 -0.3633 -0.8901 -0.5135 21 1 5.2675 -0.0494 0.0024 22 1 0.5428 -2.4122 0.0064 23 1 1.6855 -6.7769 0.0151 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533836.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:02 Heat of formation + Delta-G solvation = 23.604704 kcal Electronic energy + Delta-G solvation = -11705.004460 eV Core-core repulsion = 9385.499081 eV Total energy + Delta-G solvation = -2319.505379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.78474 -37.94602 -37.11850 -35.20156 -34.40100 -31.82773 -28.78445 -26.99453 -23.84967 -23.59597 -20.81522 -18.69478 -18.19463 -17.21716 -16.54653 -16.24614 -15.39247 -14.99672 -14.24583 -13.86669 -13.86358 -13.84194 -13.25193 -12.93623 -12.59207 -12.25132 -12.13438 -11.98784 -11.95174 -11.52657 -10.79789 -9.87593 -9.01573 -8.56776 -5.93159 0.06992 0.41553 1.09275 1.25673 1.33956 1.36817 2.11351 2.55981 2.67042 3.14672 3.56579 3.66317 3.82611 4.25811 4.47062 4.70954 4.79635 5.04627 5.27259 5.42031 5.87721 6.32625 6.57296 6.84707 7.04111 7.41862 8.57152 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.057664 B = 0.008395 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.458828 B = 3334.506695 C = 3804.813062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.001 4.001 3 N -0.406 5.406 4 C -0.018 4.018 5 Cl -0.037 7.037 6 C 0.138 3.862 7 N -0.531 5.531 8 C 0.304 3.696 9 N -0.538 5.538 10 C -0.307 4.307 11 H 0.087 0.913 12 C -0.008 4.008 13 N -0.908 5.908 14 Si 0.945 3.055 15 H -0.254 1.254 16 H -0.268 1.268 17 H -0.234 1.234 18 H 0.087 0.913 19 H 0.093 0.907 20 H 0.072 0.928 21 H 0.186 0.814 22 H 0.401 0.599 23 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 10.059 0.035 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 N -0.122 5.122 4 C -0.185 4.185 5 Cl -0.009 7.009 6 C -0.029 4.029 7 N -0.255 5.255 8 C 0.059 3.941 9 N -0.150 5.150 10 C -0.438 4.438 11 H 0.105 0.895 12 C -0.211 4.211 13 N -0.545 5.545 14 Si 0.765 3.235 15 H -0.178 1.178 16 H -0.193 1.193 17 H -0.158 1.158 18 H 0.105 0.895 19 H 0.111 0.889 20 H 0.091 0.909 21 H 0.203 0.797 22 H 0.241 0.759 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.020 9.623 0.040 10.429 hybrid contribution -0.376 -0.368 0.004 0.526 sum -4.396 9.255 0.044 10.246 Atomic orbital electron populations 1.20564 0.86143 1.03895 1.03836 1.21464 0.98463 0.85770 1.10071 1.67145 1.08095 1.29118 1.07795 1.21950 0.90424 0.88187 1.17981 1.98304 1.73269 1.31808 1.97531 1.23451 1.01714 0.85402 0.92344 1.68170 1.07750 1.28695 1.20906 1.19185 0.89660 0.87243 0.98009 1.41043 1.07315 1.02233 1.64457 1.19388 0.94116 0.82483 1.47814 0.89494 1.26009 1.05019 0.93890 0.96144 1.69811 1.38974 0.98511 1.47184 0.85610 0.77102 0.80418 0.80346 1.17833 1.19272 1.15779 0.89461 0.88869 0.90901 0.79750 0.75872 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.75 71.24 0.69 -1.72 14 2 C 0.00 -0.05 6.81 42.80 0.29 0.24 14 3 N -0.41 -15.40 10.40 -173.63 -1.81 -17.21 14 4 C -0.02 -0.64 7.28 84.67 0.62 -0.02 14 5 Cl -0.04 -1.09 29.13 -2.72 -0.08 -1.17 14 6 C 0.14 5.19 11.00 84.70 0.93 6.12 14 7 N -0.53 -24.10 9.27 -192.51 -1.78 -25.88 14 8 C 0.30 13.28 7.41 133.04 0.99 14.27 14 9 N -0.54 -23.98 5.13 -188.91 -0.97 -24.95 14 10 C -0.31 -16.24 10.19 84.04 0.86 -15.38 14 11 H 0.09 5.28 7.32 -2.91 -0.02 5.26 14 12 C -0.01 -0.42 5.50 84.87 0.47 0.04 14 13 N -0.91 -50.21 13.96 21.65 0.30 -49.91 14 14 Si 0.95 35.73 27.74 68.60 1.90 37.63 14 15 H -0.25 -9.17 7.11 99.48 0.71 -8.46 14 16 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 17 H -0.23 -7.59 6.52 99.48 0.65 -6.95 14 18 H 0.09 2.15 8.14 -2.39 -0.02 2.13 14 19 H 0.09 2.27 8.14 -2.39 -0.02 2.25 14 20 H 0.07 1.87 6.56 -2.39 -0.02 1.86 14 21 H 0.19 5.66 8.06 -2.91 -0.02 5.64 14 22 H 0.40 15.36 3.74 -92.70 -0.35 15.01 14 23 H 0.28 14.40 8.31 -92.70 -0.77 13.63 14 Total: -1.00 -60.17 224.59 3.26 -56.91 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.85 Total: 21.02 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.84 Total: 3.56 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -4.26 Total: -117.95 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 1.90 Total: 37.63 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -60.17 3.26 -56.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533836.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.515 kcal (2) G-P(sol) polarization free energy of solvation -60.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds