Wall clock time and date at job start Sun Mar 29 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 119.92574 * 2 1 4 4 N 1.32290 * 120.21752 * 180.02562 * 3 2 1 5 5 C 1.32034 * 120.07251 * 359.71057 * 4 3 2 6 6 Cl 1.73592 * 120.07560 * 180.27542 * 5 4 3 7 7 C 1.39539 * 119.85148 * 0.56915 * 5 4 3 8 8 N 1.38832 * 120.10713 * 179.71247 * 7 5 4 9 9 C 1.36881 * 120.00237 * 179.72346 * 8 7 5 10 10 H 1.08002 * 120.00159 * 359.97438 * 9 8 7 11 11 C 1.38826 * 120.00170 * 179.71881 * 9 8 7 12 12 N 1.31564 * 119.99647 * 0.27473 * 11 9 8 13 13 Si 1.86794 * 119.99923 * 180.27659 * 11 9 8 14 14 H 1.48491 * 109.47447 * 60.00272 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47413 * 299.99801 * 13 11 9 17 17 N 1.32175 * 119.93229 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.46919 * 269.97269 * 1 2 3 19 19 H 1.09003 * 109.47127 * 29.97855 * 1 2 3 20 20 H 1.09008 * 109.46586 * 149.97477 * 1 2 3 21 21 H 1.08008 * 119.89416 * 0.02562 * 3 2 1 22 22 H 0.97000 * 120.00212 * 359.71647 * 8 7 5 23 23 H 0.97005 * 119.99685 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1982 0.0000 4 7 3.5196 1.2049 -0.0005 5 6 4.1870 0.0657 0.0047 6 17 5.9229 0.0745 0.0113 7 6 3.4940 -1.1454 -0.0012 8 7 4.1904 -2.3463 -0.0017 9 6 3.5084 -3.5331 -0.0018 10 1 2.4284 -3.5353 -0.0010 11 6 4.2048 -4.7340 -0.0083 12 7 5.5205 -4.7314 -0.0088 13 14 3.2739 -6.3535 -0.0162 14 1 2.4199 -6.4277 -1.2287 15 1 4.2412 -7.4803 -0.0217 16 1 2.4208 -6.4401 1.1962 17 7 2.1665 -1.1454 -0.0005 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5143 21 1 1.6538 2.1319 0.0004 22 1 5.1604 -2.3445 -0.0021 23 1 6.0071 -5.5705 -0.0129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533894.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:08 Heat of formation + Delta-G solvation = 31.898645 kcal Electronic energy + Delta-G solvation = -11712.393991 eV Core-core repulsion = 9393.248265 eV Total energy + Delta-G solvation = -2319.145726 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.85860 -36.02178 -35.68511 -33.20845 -32.51081 -30.00945 -27.02259 -25.14087 -22.47151 -21.73596 -18.39589 -16.67021 -16.26939 -16.04276 -14.66922 -14.44765 -13.81113 -13.18203 -12.73014 -12.37968 -11.92909 -11.81323 -11.72748 -11.10017 -11.01168 -10.73604 -10.60307 -10.45843 -10.22745 -9.63322 -8.83184 -8.11669 -7.22015 -6.86156 -4.00121 1.81509 2.28578 2.78708 3.05639 3.08267 3.08859 3.84475 4.46002 4.51457 4.99511 5.24244 5.47455 5.69093 5.81816 5.98092 6.14652 6.32069 6.47219 7.08573 7.21851 7.49769 8.26358 8.45197 8.75262 8.93056 9.35103 10.27253 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.011463 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.097902 B = 2442.106438 C = 3375.053891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.152 3.848 3 C -0.105 4.105 4 N -0.389 5.389 5 C 0.008 3.992 6 Cl -0.063 7.063 7 C 0.313 3.687 8 N -0.492 5.492 9 C -0.286 4.286 10 H 0.119 0.881 11 C 0.023 3.977 12 N -0.872 5.872 13 Si 0.945 3.055 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.268 1.268 17 N -0.506 5.506 18 H 0.074 0.926 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.147 0.853 22 H 0.414 0.586 23 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 3.806 0.016 6.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.001 3.999 3 C -0.268 4.268 4 N -0.103 5.103 5 C -0.175 4.175 6 Cl -0.035 7.035 7 C 0.064 3.936 8 N -0.094 5.094 9 C -0.417 4.417 10 H 0.137 0.863 11 C -0.184 4.184 12 N -0.506 5.506 13 Si 0.770 3.230 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.192 1.192 17 N -0.232 5.232 18 H 0.092 0.908 19 H 0.090 0.910 20 H 0.092 0.908 21 H 0.164 0.836 22 H 0.253 0.747 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.330 3.256 0.010 5.418 hybrid contribution 0.379 -0.704 0.004 0.799 sum -3.951 2.552 0.014 4.704 Atomic orbital electron populations 1.20581 0.89279 1.02845 1.02543 1.21785 0.96946 0.89242 0.91910 1.22202 0.88546 0.97862 1.18204 1.67060 1.09280 1.28176 1.05746 1.21190 0.85739 0.89999 1.20576 1.98298 1.09332 1.98375 1.97514 1.18401 0.88787 0.85714 1.00664 1.41207 1.08920 1.01983 1.57312 1.20120 0.94260 0.81721 1.45618 0.86297 1.25602 0.95848 1.00767 0.96161 1.69685 1.06266 1.29828 1.44817 0.85678 0.78810 0.78942 0.79602 1.19251 1.20466 1.19249 1.67881 1.05264 1.28164 1.21930 0.90766 0.90994 0.90844 0.83595 0.74695 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 10.19 36.01 0.37 -0.95 14 2 C 0.15 2.95 6.78 -82.44 -0.56 2.39 14 3 C -0.11 -2.04 10.86 -17.35 -0.19 -2.22 14 4 N -0.39 -8.53 10.48 -9.96 -0.10 -8.63 14 5 C 0.01 0.17 7.32 -16.98 -0.12 0.05 14 6 Cl -0.06 -1.30 27.78 -51.86 -1.44 -2.74 14 7 C 0.31 7.62 7.44 -154.74 -1.15 6.47 14 8 N -0.49 -12.48 5.38 -11.03 -0.06 -12.54 14 9 C -0.29 -7.37 9.71 -15.08 -0.15 -7.51 14 10 H 0.12 3.05 7.10 -52.49 -0.37 2.68 14 11 C 0.02 0.57 5.50 -17.45 -0.10 0.47 14 12 N -0.87 -22.38 13.05 55.49 0.72 -21.65 14 13 Si 0.94 19.20 29.55 -169.99 -5.02 14.17 14 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 17 N -0.51 -11.72 9.19 -8.44 -0.08 -11.80 14 18 H 0.07 0.93 8.14 -51.93 -0.42 0.51 14 19 H 0.07 0.80 8.08 -51.93 -0.42 0.38 14 20 H 0.07 1.03 8.14 -51.92 -0.42 0.61 14 21 H 0.15 2.28 8.06 -52.48 -0.42 1.86 14 22 H 0.41 10.50 6.56 -40.82 -0.27 10.23 14 23 H 0.28 6.78 8.31 -40.82 -0.34 6.44 14 LS Contribution 228.94 15.07 3.45 3.45 Total: -1.00 -27.56 228.94 -5.89 -33.45 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -1.46 Total: 7.59 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.90 Total: -1.30 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.48 Total: -54.62 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.44 Total: -2.74 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.56 -5.89 -33.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533894.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.350 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds