Wall clock time and date at job start Sun Mar 29 2020 21:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 119.92574 * 2 1 4 4 N 1.32290 * 120.21752 * 180.02562 * 3 2 1 5 5 C 1.32034 * 120.07251 * 359.71057 * 4 3 2 6 6 Cl 1.73592 * 120.07560 * 180.27542 * 5 4 3 7 7 C 1.39539 * 119.85148 * 0.56915 * 5 4 3 8 8 N 1.38832 * 120.10713 * 179.71247 * 7 5 4 9 9 C 1.36881 * 120.00237 * 179.72346 * 8 7 5 10 10 H 1.08002 * 120.00159 * 359.97438 * 9 8 7 11 11 C 1.38826 * 120.00170 * 179.71881 * 9 8 7 12 12 N 1.31564 * 119.99647 * 0.27473 * 11 9 8 13 13 Si 1.86794 * 119.99923 * 180.27659 * 11 9 8 14 14 H 1.48491 * 109.47447 * 60.00272 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47413 * 299.99801 * 13 11 9 17 17 N 1.32175 * 119.93229 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.46919 * 269.97269 * 1 2 3 19 19 H 1.09003 * 109.47127 * 29.97855 * 1 2 3 20 20 H 1.09008 * 109.46586 * 149.97477 * 1 2 3 21 21 H 1.08008 * 119.89416 * 0.02562 * 3 2 1 22 22 H 0.97000 * 120.00212 * 359.71647 * 8 7 5 23 23 H 0.97005 * 119.99685 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1982 0.0000 4 7 3.5196 1.2049 -0.0005 5 6 4.1870 0.0657 0.0047 6 17 5.9229 0.0745 0.0113 7 6 3.4940 -1.1454 -0.0012 8 7 4.1904 -2.3463 -0.0017 9 6 3.5084 -3.5331 -0.0018 10 1 2.4284 -3.5353 -0.0010 11 6 4.2048 -4.7340 -0.0083 12 7 5.5205 -4.7314 -0.0088 13 14 3.2739 -6.3535 -0.0162 14 1 2.4199 -6.4277 -1.2287 15 1 4.2412 -7.4803 -0.0217 16 1 2.4208 -6.4401 1.1962 17 7 2.1665 -1.1454 -0.0005 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5143 21 1 1.6538 2.1319 0.0004 22 1 5.1604 -2.3445 -0.0021 23 1 6.0071 -5.5705 -0.0129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533894.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:07 Heat of formation + Delta-G solvation = 13.978689 kcal Electronic energy + Delta-G solvation = -11713.171059 eV Core-core repulsion = 9393.248265 eV Total energy + Delta-G solvation = -2319.922794 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.58221 -37.74661 -37.40034 -34.87867 -34.24136 -31.64365 -28.57895 -26.88728 -24.19726 -23.37455 -20.19567 -18.41016 -18.00805 -17.70462 -16.39167 -16.13377 -15.52188 -14.69616 -14.01443 -13.92666 -13.52496 -13.47314 -13.04687 -12.81918 -12.70331 -12.33985 -12.16880 -12.12157 -12.01050 -11.35946 -10.56857 -9.81335 -8.96201 -8.65117 -5.90895 0.14791 0.56548 1.09285 1.40638 1.49534 1.52954 2.18536 2.74341 2.79130 3.20613 3.68745 3.85087 4.19235 4.34590 4.60225 4.91923 5.03779 5.20624 5.27163 5.52797 5.77880 6.50332 6.67094 7.01345 7.12561 7.55115 8.50270 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.011463 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.097902 B = 2442.106438 C = 3375.053891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.147 3.853 3 C -0.082 4.082 4 N -0.401 5.401 5 C -0.020 4.020 6 Cl -0.053 7.053 7 C 0.310 3.690 8 N -0.519 5.519 9 C -0.314 4.314 10 H 0.111 0.889 11 C -0.019 4.019 12 N -0.911 5.911 13 Si 1.009 2.991 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.264 1.264 17 N -0.530 5.530 18 H 0.095 0.905 19 H 0.111 0.889 20 H 0.070 0.930 21 H 0.195 0.805 22 H 0.408 0.592 23 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 5.075 0.027 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.003 4.003 3 C -0.246 4.246 4 N -0.116 5.116 5 C -0.199 4.199 6 Cl -0.025 7.025 7 C 0.063 3.937 8 N -0.124 5.124 9 C -0.444 4.444 10 H 0.129 0.871 11 C -0.221 4.221 12 N -0.547 5.547 13 Si 0.831 3.169 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.188 1.188 17 N -0.258 5.258 18 H 0.113 0.887 19 H 0.129 0.871 20 H 0.089 0.911 21 H 0.212 0.788 22 H 0.246 0.754 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.522 4.559 0.021 7.957 hybrid contribution 0.861 -0.698 0.003 1.109 sum -5.660 3.861 0.024 6.852 Atomic orbital electron populations 1.20774 0.84954 1.04719 1.04381 1.22790 0.99690 0.88239 0.89559 1.23175 0.87945 0.99855 1.13614 1.67198 1.10582 1.27608 1.06164 1.21280 0.86622 0.90027 1.21957 1.98288 1.08326 1.98360 1.97538 1.18790 0.89620 0.86042 0.99222 1.41162 1.08543 1.02238 1.60499 1.20185 0.94042 0.82580 1.47642 0.87090 1.26437 0.96586 1.03474 0.95604 1.69769 1.07486 1.30469 1.46994 0.84731 0.77585 0.74997 0.79597 1.18833 1.19892 1.18822 1.67984 1.05017 1.30384 1.22372 0.88674 0.87092 0.91057 0.78843 0.75417 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.11 10.19 71.24 0.73 -1.39 14 2 C 0.15 5.23 6.78 42.51 0.29 5.52 14 3 C -0.08 -2.82 10.86 84.63 0.92 -1.90 14 4 N -0.40 -16.70 10.48 -185.42 -1.94 -18.64 14 5 C -0.02 -0.92 7.32 84.98 0.62 -0.30 14 6 Cl -0.05 -2.20 27.78 -2.72 -0.08 -2.27 14 7 C 0.31 15.18 7.44 133.12 0.99 16.17 14 8 N -0.52 -27.20 5.38 -188.80 -1.02 -28.22 14 9 C -0.31 -16.69 9.71 84.05 0.82 -15.87 14 10 H 0.11 5.86 7.10 -2.91 -0.02 5.84 14 11 C -0.02 -0.96 5.50 84.87 0.47 -0.50 14 12 N -0.91 -48.38 13.05 21.65 0.28 -48.10 14 13 Si 1.01 39.91 29.55 68.60 2.03 41.94 14 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 14 15 H -0.27 -10.45 7.11 99.48 0.71 -9.74 14 16 H -0.26 -10.10 7.11 99.48 0.71 -9.40 14 17 N -0.53 -24.07 9.19 -180.63 -1.66 -25.73 14 18 H 0.09 1.91 8.14 -2.39 -0.02 1.89 14 19 H 0.11 1.77 8.08 -2.39 -0.02 1.75 14 20 H 0.07 1.75 8.14 -2.38 -0.02 1.73 14 21 H 0.19 4.81 8.06 -2.91 -0.02 4.79 14 22 H 0.41 21.62 6.56 -92.71 -0.61 21.01 14 23 H 0.28 14.06 8.31 -92.70 -0.77 13.29 14 Total: -1.00 -60.60 228.94 3.08 -57.51 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.64 Total: 21.76 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 4.83 Total: 1.74 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -4.34 Total: -120.68 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.27 kcal Total: -60.60 3.08 -57.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533894.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.492 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds