Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86801 * 119.99505 * 2 1 4 4 H 1.48500 * 109.46745 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47414 * 299.99572 * 3 2 1 6 6 H 1.48496 * 109.47322 * 60.00122 * 3 2 1 7 7 C 1.38799 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36907 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.38844 * 119.99948 * 180.02562 * 9 7 2 11 11 C 1.39067 * 119.65516 * 0.02562 * 10 9 7 12 12 C 1.38537 * 119.26754 * 180.02562 * 11 10 9 13 13 C 1.38619 * 118.57934 * 359.96108 * 12 11 10 14 14 Cl 1.73600 * 120.37799 * 180.29664 * 13 12 11 15 15 C 1.39175 * 119.24826 * 0.02562 * 13 12 11 16 16 N 1.39045 * 119.65703 * 180.02562 * 15 13 12 17 17 N 1.32397 * 120.67746 * 0.02562 * 15 13 12 18 18 H 0.96996 * 119.99940 * 0.02562 * 1 2 3 19 19 H 0.96998 * 120.00292 * 0.02562 * 9 7 2 20 20 H 1.08002 * 120.36841 * 0.02562 * 11 10 9 21 21 H 1.07999 * 120.71514 * 179.97438 * 12 11 10 22 22 H 0.97000 * 120.00385 * 0.02562 * 16 15 13 23 23 H 0.97004 * 119.99216 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0898 -1.2020 0.0010 9 7 1.3254 -2.3877 0.0016 10 6 2.0196 -3.5901 0.0027 11 6 3.4102 -3.5817 0.0032 12 6 4.0948 -4.7861 0.0037 13 6 3.3642 -5.9641 0.0045 14 17 4.1742 -7.4995 0.0130 15 6 1.9738 -5.9020 0.0043 16 7 1.2326 -7.0783 0.0056 17 7 1.3499 -4.7343 0.0027 18 1 -0.4850 0.8400 -0.0004 19 1 0.3554 -2.3877 0.0016 20 1 3.9506 -2.6466 0.0032 21 1 5.1746 -4.8069 0.0037 22 1 1.6846 -7.9365 0.0071 23 1 0.2632 -7.0407 0.0050 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537372.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 28.069090 kcal Electronic energy + Delta-G solvation = -11554.246186 eV Core-core repulsion = 9234.934397 eV Total energy + Delta-G solvation = -2319.311788 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.17808 -36.12686 -35.29535 -33.51920 -31.83153 -30.60948 -27.19734 -24.98417 -22.25427 -21.37402 -18.03090 -17.24353 -16.47731 -15.29544 -15.08586 -14.64251 -13.93348 -13.75554 -13.33730 -12.27060 -12.03110 -11.82834 -11.50909 -11.23946 -10.76127 -10.50495 -10.44876 -10.36265 -9.57458 -8.85677 -8.51040 -7.99701 -6.70626 -6.67614 -3.92658 2.30621 2.48883 3.09099 3.09464 3.11791 3.15662 3.87789 4.16695 4.63022 5.03402 5.19180 5.59048 6.16274 6.31223 6.38154 6.84471 7.02041 7.26463 7.35373 7.62531 7.89287 8.08445 8.57033 8.94287 9.21534 9.61263 10.45445 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.065317 B = 0.007311 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.575753 B = 3828.924669 C = 4247.656639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.303 4.303 8 H 0.109 0.891 9 N -0.521 5.521 10 C 0.399 3.601 11 C -0.290 4.290 12 C 0.008 3.992 13 C -0.272 4.272 14 Cl -0.114 7.114 15 C 0.471 3.529 16 N -0.858 5.858 17 N -0.617 5.617 18 H 0.278 0.722 19 H 0.404 0.596 20 H 0.128 0.872 21 H 0.120 0.880 22 H 0.402 0.598 23 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -7.302 0.010 8.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.433 4.433 8 H 0.126 0.874 9 N -0.126 5.126 10 C 0.153 3.847 11 C -0.317 4.317 12 C -0.017 4.017 13 C -0.310 4.310 14 Cl -0.086 7.086 15 C 0.227 3.773 16 N -0.404 5.404 17 N -0.350 5.350 18 H 0.088 0.912 19 H 0.240 0.760 20 H 0.146 0.854 21 H 0.138 0.862 22 H 0.232 0.768 23 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.537 -6.789 0.010 7.655 hybrid contribution 0.644 0.346 0.003 0.731 sum 4.181 -6.443 0.013 7.681 Atomic orbital electron populations 1.69718 1.06123 1.28874 1.46983 1.25406 0.95805 1.00186 0.96697 0.85670 0.79463 0.80374 0.78120 1.18925 1.20367 1.20372 1.19856 0.93264 0.81961 1.48261 0.87385 1.40880 1.08886 1.01166 1.61650 1.17855 0.88357 0.84962 0.93540 1.20894 0.93176 0.97711 1.19916 1.20626 0.98571 0.90156 0.92393 1.20238 0.90581 0.85690 1.34498 1.98213 1.79970 1.32001 1.98456 1.17356 0.85829 0.86152 0.87982 1.42188 1.08891 1.04733 1.84546 1.66522 1.38851 0.95988 1.33655 0.91238 0.76019 0.85431 0.86205 0.76761 0.77459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.10 13.05 55.49 0.72 -22.38 14 2 C 0.02 0.60 5.50 -17.45 -0.10 0.51 14 3 Si 0.94 19.17 29.55 -169.99 -5.02 14.14 14 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 14 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 14 7 C -0.30 -7.62 9.54 -15.08 -0.14 -7.76 14 8 H 0.11 2.57 5.64 -52.49 -0.30 2.28 14 9 N -0.52 -13.11 5.44 -11.18 -0.06 -13.17 14 10 C 0.40 9.44 7.61 -155.05 -1.18 8.26 14 11 C -0.29 -6.25 9.33 -39.16 -0.37 -6.62 14 12 C 0.01 0.16 9.96 -39.33 -0.39 -0.23 14 13 C -0.27 -5.20 6.37 -39.09 -0.25 -5.45 14 14 Cl -0.11 -1.80 27.60 -51.86 -1.43 -3.24 14 15 C 0.47 9.37 7.75 -154.97 -1.20 8.17 14 16 N -0.86 -13.37 9.03 31.14 0.28 -13.09 14 17 N -0.62 -13.97 10.42 -11.58 -0.12 -14.09 14 18 H 0.28 6.81 8.31 -40.82 -0.34 6.47 14 19 H 0.40 10.55 8.01 -40.82 -0.33 10.22 14 20 H 0.13 2.67 5.92 -52.49 -0.31 2.36 14 21 H 0.12 1.97 8.06 -52.49 -0.42 1.55 14 22 H 0.40 5.41 7.47 -40.82 -0.30 5.11 14 23 H 0.40 5.60 8.95 -40.82 -0.37 5.24 14 LS Contribution 224.85 15.07 3.39 3.39 Total: -1.00 -26.69 224.85 -7.03 -33.72 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -1.16 Total: 17.84 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.63 Total: -3.12 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.82 Total: -62.73 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.43 Total: -3.24 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -26.69 -7.03 -33.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537372.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.786 kcal (2) G-P(sol) polarization free energy of solvation -26.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds