Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86801 * 119.99505 * 2 1 4 4 H 1.48500 * 109.46745 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47414 * 299.99572 * 3 2 1 6 6 H 1.48496 * 109.47322 * 60.00122 * 3 2 1 7 7 C 1.38799 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36907 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.38844 * 119.99948 * 180.02562 * 9 7 2 11 11 C 1.39067 * 119.65516 * 0.02562 * 10 9 7 12 12 C 1.38537 * 119.26754 * 180.02562 * 11 10 9 13 13 C 1.38619 * 118.57934 * 359.96108 * 12 11 10 14 14 Cl 1.73600 * 120.37799 * 180.29664 * 13 12 11 15 15 C 1.39175 * 119.24826 * 0.02562 * 13 12 11 16 16 N 1.39045 * 119.65703 * 180.02562 * 15 13 12 17 17 N 1.32397 * 120.67746 * 0.02562 * 15 13 12 18 18 H 0.96996 * 119.99940 * 0.02562 * 1 2 3 19 19 H 0.96998 * 120.00292 * 0.02562 * 9 7 2 20 20 H 1.08002 * 120.36841 * 0.02562 * 11 10 9 21 21 H 1.07999 * 120.71514 * 179.97438 * 12 11 10 22 22 H 0.97000 * 120.00385 * 0.02562 * 16 15 13 23 23 H 0.97004 * 119.99216 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0898 -1.2020 0.0010 9 7 1.3254 -2.3877 0.0016 10 6 2.0196 -3.5901 0.0027 11 6 3.4102 -3.5817 0.0032 12 6 4.0948 -4.7861 0.0037 13 6 3.3642 -5.9641 0.0045 14 17 4.1742 -7.4995 0.0130 15 6 1.9738 -5.9020 0.0043 16 7 1.2326 -7.0783 0.0056 17 7 1.3499 -4.7343 0.0027 18 1 -0.4850 0.8400 -0.0004 19 1 0.3554 -2.3877 0.0016 20 1 3.9506 -2.6466 0.0032 21 1 5.1746 -4.8069 0.0037 22 1 1.6846 -7.9365 0.0071 23 1 0.2632 -7.0407 0.0050 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537372.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 10.937930 kcal Electronic energy + Delta-G solvation = -11554.989049 eV Core-core repulsion = 9234.934397 eV Total energy + Delta-G solvation = -2320.054651 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.84413 -37.73858 -36.83346 -35.09457 -33.55640 -32.28857 -28.83011 -26.79921 -23.86808 -23.05565 -19.80080 -18.86929 -18.02554 -16.86804 -16.70963 -16.31415 -15.55934 -15.41767 -14.99547 -13.83064 -13.70633 -13.47992 -13.16675 -12.79428 -12.27035 -12.21739 -12.03549 -11.83494 -11.22295 -10.51108 -10.18816 -9.67065 -8.51761 -8.29077 -5.82087 0.66410 0.85520 1.45356 1.50712 1.56996 1.60442 2.23283 2.66791 2.88270 3.33521 3.42498 4.04095 4.53838 4.72743 4.75110 5.21042 5.28407 5.52455 5.70731 5.92829 6.44604 6.56261 6.82022 7.29087 7.41023 7.85332 8.66845 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.065317 B = 0.007311 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.575753 B = 3828.924669 C = 4247.656639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.006 2.994 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.319 4.319 8 H 0.116 0.884 9 N -0.549 5.549 10 C 0.390 3.610 11 C -0.309 4.309 12 C 0.018 3.982 13 C -0.267 4.267 14 Cl -0.078 7.078 15 C 0.458 3.542 16 N -0.839 5.839 17 N -0.639 5.639 18 H 0.277 0.723 19 H 0.392 0.608 20 H 0.130 0.870 21 H 0.153 0.847 22 H 0.415 0.585 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -8.717 0.013 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.226 4.226 3 Si 0.829 3.171 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.449 4.449 8 H 0.133 0.867 9 N -0.156 5.156 10 C 0.147 3.853 11 C -0.337 4.337 12 C -0.008 4.008 13 C -0.305 4.305 14 Cl -0.050 7.050 15 C 0.214 3.786 16 N -0.386 5.386 17 N -0.372 5.372 18 H 0.087 0.913 19 H 0.225 0.775 20 H 0.147 0.853 21 H 0.171 0.829 22 H 0.247 0.753 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.377 -8.311 0.013 9.899 hybrid contribution 0.175 0.364 0.002 0.404 sum 5.552 -7.948 0.015 9.695 Atomic orbital electron populations 1.69830 1.07633 1.29477 1.49433 1.26327 0.96560 1.03280 0.96464 0.84657 0.78720 0.75992 0.77763 1.17581 1.20352 1.20365 1.20169 0.93703 0.82440 1.48598 0.86677 1.40896 1.08197 1.01779 1.64751 1.18250 0.89321 0.84982 0.92796 1.21006 0.92441 0.98957 1.21270 1.20987 1.00220 0.89232 0.90351 1.20469 0.90702 0.87485 1.31840 1.98232 1.79149 1.29341 1.98259 1.17695 0.86817 0.86431 0.87692 1.42133 1.09392 1.03994 1.83042 1.66520 1.39815 0.96656 1.34235 0.91333 0.77469 0.85253 0.82906 0.75259 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.33 13.05 21.65 0.28 -50.05 14 2 C -0.03 -1.34 5.50 84.86 0.47 -0.87 14 3 Si 1.01 39.75 29.55 68.60 2.03 41.77 14 4 H -0.25 -9.29 7.11 99.48 0.71 -8.58 14 5 H -0.28 -10.84 7.11 99.48 0.71 -10.13 14 6 H -0.28 -10.84 7.11 99.48 0.71 -10.14 14 7 C -0.32 -16.44 9.54 84.04 0.80 -15.64 14 8 H 0.12 5.54 5.64 -2.91 -0.02 5.53 14 9 N -0.55 -28.54 5.44 -189.28 -1.03 -29.57 14 10 C 0.39 18.59 7.61 133.05 1.01 19.60 14 11 C -0.31 -13.06 9.33 22.54 0.21 -12.85 14 12 C 0.02 0.63 9.96 22.43 0.22 0.85 14 13 C -0.27 -9.42 6.37 22.59 0.14 -9.27 14 14 Cl -0.08 -2.16 27.60 -2.72 -0.08 -2.23 14 15 C 0.46 17.33 7.75 133.06 1.03 18.36 14 16 N -0.84 -24.03 9.03 -55.38 -0.50 -24.53 14 17 N -0.64 -28.67 10.42 -190.54 -1.99 -30.66 14 18 H 0.28 14.12 8.31 -92.71 -0.77 13.34 14 19 H 0.39 21.48 8.01 -92.71 -0.74 20.74 14 20 H 0.13 5.34 5.92 -2.91 -0.02 5.33 14 21 H 0.15 4.41 8.06 -2.91 -0.02 4.39 14 22 H 0.41 9.79 7.47 -92.71 -0.69 9.10 14 23 H 0.41 10.59 8.95 -92.71 -0.83 9.76 14 Total: -1.00 -57.39 224.85 1.64 -55.76 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.97 Total: 39.33 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 3.89 Total: 0.18 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -3.23 Total: -134.81 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.23 kcal Total: -57.39 1.64 -55.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537372.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.693 kcal (2) G-P(sol) polarization free energy of solvation -57.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds