Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31970 * 120.03383 * 2 1 4 4 C 1.32224 * 120.09806 * 180.02562 * 3 2 1 5 5 C 1.38482 * 120.17970 * 359.97438 * 4 3 2 6 6 Cl 1.73605 * 119.96485 * 180.02562 * 5 4 3 7 7 N 1.32237 * 120.07547 * 0.02562 * 5 4 3 8 8 C 1.32812 * 119.89035 * 359.70979 * 7 5 4 9 9 N 1.38822 * 120.08569 * 180.27941 * 8 7 5 10 10 C 1.36901 * 119.99665 * 0.28918 * 9 8 7 11 11 H 1.07991 * 120.00400 * 359.97438 * 10 9 8 12 12 C 1.38822 * 119.99667 * 180.02562 * 10 9 8 13 13 N 1.31563 * 120.00304 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00197 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46830 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47498 * 119.99268 * 14 12 10 17 17 H 1.48496 * 109.47046 * 239.99726 * 14 12 10 18 18 H 1.09001 * 109.46953 * 90.00273 * 1 2 3 19 19 H 1.09000 * 109.47318 * 209.99870 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.00501 * 1 2 3 21 21 H 1.08003 * 119.90580 * 179.97438 * 4 3 2 22 22 H 0.97000 * 120.00134 * 180.28234 * 9 8 7 23 23 H 0.96997 * 120.00549 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1676 1.1425 0.0000 4 6 3.4898 1.1440 -0.0005 5 6 4.1873 -0.0523 -0.0005 6 17 5.9234 -0.0439 -0.0005 7 7 3.5325 -1.2012 -0.0005 8 6 2.2044 -1.2061 0.0053 9 7 1.5130 -2.4098 0.0112 10 6 2.2001 -3.5939 0.0170 11 1 3.2800 -3.5915 0.0165 12 6 1.5086 -4.7976 0.0223 13 7 0.1930 -4.8005 0.0223 14 14 2.4461 -6.4133 0.0295 15 1 3.9055 -6.1387 0.0276 16 1 2.0893 -7.1874 1.2455 17 1 2.0890 -7.1981 -1.1795 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 4.0272 2.0808 -0.0009 22 1 0.5430 -2.4120 0.0113 23 1 -0.2902 -5.6416 0.0264 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181588.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = 34.202726 kcal Electronic energy + Delta-G solvation = -11712.067908 eV Core-core repulsion = 9393.022094 eV Total energy + Delta-G solvation = -2319.045814 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.97225 -36.27653 -35.69235 -33.25941 -32.51968 -29.98199 -26.90505 -25.35993 -22.30849 -21.87129 -18.56177 -17.14935 -16.24084 -15.16858 -14.74862 -14.50323 -14.17202 -13.68276 -12.58338 -12.10241 -11.85558 -11.83318 -11.67743 -11.20103 -10.86539 -10.85638 -10.78144 -10.52226 -10.26974 -9.64843 -8.85157 -8.18631 -7.26171 -6.87140 -4.01457 1.74547 2.22763 2.43093 3.04847 3.07162 3.14135 3.85749 4.43266 4.59543 4.97809 5.14554 5.45443 5.84450 5.92664 6.03246 6.13950 6.34547 6.52163 7.09573 7.19509 7.49666 8.18405 8.46515 8.73242 8.92461 9.30753 10.26943 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.010566 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.342618 B = 2649.296201 C = 3557.491903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.025 4.025 3 N -0.386 5.386 4 C -0.097 4.097 5 C 0.204 3.796 6 Cl -0.060 7.060 7 N -0.518 5.518 8 C 0.317 3.683 9 N -0.499 5.499 10 C -0.285 4.285 11 H 0.119 0.881 12 C 0.023 3.977 13 N -0.878 5.878 14 Si 0.940 3.060 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.277 1.277 18 H 0.065 0.935 19 H 0.064 0.936 20 H 0.069 0.931 21 H 0.150 0.850 22 H 0.413 0.587 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 4.454 -0.003 5.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.183 4.183 3 N -0.100 5.100 4 C -0.259 4.259 5 C 0.029 3.971 6 Cl -0.032 7.032 7 N -0.245 5.245 8 C 0.069 3.931 9 N -0.104 5.104 10 C -0.416 4.416 11 H 0.136 0.864 12 C -0.183 4.183 13 N -0.513 5.513 14 Si 0.766 3.234 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.202 1.202 18 H 0.084 0.916 19 H 0.083 0.917 20 H 0.088 0.912 21 H 0.167 0.833 22 H 0.252 0.748 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.460 3.936 -0.003 4.642 hybrid contribution 0.244 -0.943 -0.003 0.974 sum 2.704 2.993 -0.006 4.034 Atomic orbital electron populations 1.20339 0.89234 1.02349 1.01973 1.21036 0.96788 0.87985 1.12520 1.67783 1.07707 1.28059 1.06430 1.22201 0.89861 0.96164 1.17637 1.22289 0.86045 0.91124 0.97642 1.98337 1.09688 1.98601 1.96593 1.67031 1.07374 1.27710 1.22398 1.18597 0.87418 0.87100 0.99961 1.41183 1.08551 1.01948 1.58755 1.20198 0.94249 0.81824 1.45357 0.86370 1.25534 0.95862 1.00621 0.96293 1.69661 1.06322 1.29398 1.45935 0.85607 0.79884 0.79744 0.78178 1.18592 1.20212 1.20215 0.91626 0.91677 0.91201 0.83313 0.74840 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.76 36.01 0.35 -1.04 14 2 C -0.03 -0.53 6.81 -82.13 -0.56 -1.09 14 3 N -0.39 -8.03 10.41 -9.04 -0.09 -8.13 14 4 C -0.10 -1.91 11.00 -17.29 -0.19 -2.10 14 5 C 0.20 4.27 7.28 -17.29 -0.13 4.15 14 6 Cl -0.06 -1.05 29.13 -51.86 -1.51 -2.56 14 7 N -0.52 -12.32 9.25 -9.36 -0.09 -12.40 14 8 C 0.32 7.42 7.41 -154.77 -1.15 6.27 14 9 N -0.50 -12.05 5.32 -11.07 -0.06 -12.11 14 10 C -0.28 -7.26 9.71 -15.07 -0.15 -7.41 14 11 H 0.12 3.11 7.09 -52.49 -0.37 2.74 14 12 C 0.02 0.56 5.50 -17.45 -0.10 0.46 14 13 N -0.88 -21.92 13.05 55.49 0.72 -21.19 14 14 Si 0.94 19.33 29.55 -169.99 -5.02 14.30 14 15 H -0.26 -5.40 7.11 56.52 0.40 -4.99 14 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 14 17 H -0.28 -5.62 7.11 56.52 0.40 -5.21 14 18 H 0.07 1.04 8.14 -51.93 -0.42 0.62 14 19 H 0.06 1.10 6.54 -51.93 -0.34 0.76 14 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 21 H 0.15 2.48 8.06 -52.48 -0.42 2.06 14 22 H 0.41 9.56 5.87 -40.82 -0.24 9.32 14 23 H 0.28 6.57 8.31 -40.82 -0.34 6.23 14 LS Contribution 227.69 15.07 3.43 3.43 Total: -1.00 -26.57 227.69 -5.89 -32.46 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -1.35 Total: 6.96 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.91 Total: -0.76 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.48 Total: -53.83 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.51 Total: -2.56 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.57 -5.89 -32.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181588.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.661 kcal (2) G-P(sol) polarization free energy of solvation -26.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds