Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31970 * 120.03383 * 2 1 4 4 C 1.32224 * 120.09806 * 180.02562 * 3 2 1 5 5 C 1.38482 * 120.17970 * 359.97438 * 4 3 2 6 6 Cl 1.73605 * 119.96485 * 180.02562 * 5 4 3 7 7 N 1.32237 * 120.07547 * 0.02562 * 5 4 3 8 8 C 1.32812 * 119.89035 * 359.70979 * 7 5 4 9 9 N 1.38822 * 120.08569 * 180.27941 * 8 7 5 10 10 C 1.36901 * 119.99665 * 0.28918 * 9 8 7 11 11 H 1.07991 * 120.00400 * 359.97438 * 10 9 8 12 12 C 1.38822 * 119.99667 * 180.02562 * 10 9 8 13 13 N 1.31563 * 120.00304 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00197 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46830 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47498 * 119.99268 * 14 12 10 17 17 H 1.48496 * 109.47046 * 239.99726 * 14 12 10 18 18 H 1.09001 * 109.46953 * 90.00273 * 1 2 3 19 19 H 1.09000 * 109.47318 * 209.99870 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.00501 * 1 2 3 21 21 H 1.08003 * 119.90580 * 179.97438 * 4 3 2 22 22 H 0.97000 * 120.00134 * 180.28234 * 9 8 7 23 23 H 0.96997 * 120.00549 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1676 1.1425 0.0000 4 6 3.4898 1.1440 -0.0005 5 6 4.1873 -0.0523 -0.0005 6 17 5.9234 -0.0439 -0.0005 7 7 3.5325 -1.2012 -0.0005 8 6 2.2044 -1.2061 0.0053 9 7 1.5130 -2.4098 0.0112 10 6 2.2001 -3.5939 0.0170 11 1 3.2800 -3.5915 0.0165 12 6 1.5086 -4.7976 0.0223 13 7 0.1930 -4.8005 0.0223 14 14 2.4461 -6.4133 0.0295 15 1 3.9055 -6.1387 0.0276 16 1 2.0893 -7.1874 1.2455 17 1 2.0890 -7.1981 -1.1795 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 4.0272 2.0808 -0.0009 22 1 0.5430 -2.4120 0.0113 23 1 -0.2902 -5.6416 0.0264 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181588.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = 17.777198 kcal Electronic energy + Delta-G solvation = -11712.780172 eV Core-core repulsion = 9393.022094 eV Total energy + Delta-G solvation = -2319.758078 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.68641 -37.88138 -37.35397 -34.95343 -34.25717 -31.64754 -28.48551 -27.15547 -24.05320 -23.50497 -20.33694 -18.85959 -17.99873 -16.77598 -16.43076 -16.18949 -15.84662 -15.36789 -14.02891 -13.64395 -13.54041 -13.50452 -13.19496 -12.75627 -12.58973 -12.44812 -12.30221 -12.12702 -12.03266 -11.36626 -10.57354 -9.88472 -8.97161 -8.65129 -5.89238 0.08079 0.50922 0.84435 1.40503 1.43654 1.54210 2.18953 2.70958 2.86946 3.18796 3.57669 3.80818 4.15528 4.37301 4.48565 4.77770 4.86659 5.11470 5.28422 5.51325 5.73671 6.43342 6.68846 7.00610 7.14407 7.54853 8.50454 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.010566 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.342618 B = 2649.296201 C = 3557.491903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.026 4.026 3 N -0.393 5.393 4 C -0.076 4.076 5 C 0.185 3.815 6 Cl -0.030 7.030 7 N -0.549 5.549 8 C 0.310 3.690 9 N -0.519 5.519 10 C -0.312 4.312 11 H 0.101 0.899 12 C -0.013 4.013 13 N -0.907 5.907 14 Si 0.999 3.001 15 H -0.267 1.267 16 H -0.271 1.271 17 H -0.271 1.271 18 H 0.080 0.920 19 H 0.064 0.936 20 H 0.090 0.910 21 H 0.186 0.814 22 H 0.413 0.587 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 5.562 -0.026 6.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.183 4.183 3 N -0.106 5.106 4 C -0.238 4.238 5 C 0.012 3.988 6 Cl -0.002 7.002 7 N -0.277 5.277 8 C 0.064 3.936 9 N -0.127 5.127 10 C -0.443 4.443 11 H 0.118 0.882 12 C -0.216 4.216 13 N -0.544 5.544 14 Si 0.822 3.178 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.196 1.196 18 H 0.098 0.902 19 H 0.083 0.917 20 H 0.109 0.891 21 H 0.203 0.797 22 H 0.252 0.748 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.983 5.093 -0.027 5.903 hybrid contribution 0.248 -0.958 0.002 0.989 sum 3.231 4.136 -0.025 5.248 Atomic orbital electron populations 1.20418 0.86640 1.03331 1.03212 1.21591 0.98631 0.87232 1.10807 1.67943 1.08196 1.27630 1.06851 1.22889 0.89822 0.97206 1.13883 1.22671 0.87675 0.90847 0.97597 1.98343 1.06962 1.98516 1.96409 1.67056 1.08042 1.29462 1.23145 1.19050 0.87786 0.87866 0.98886 1.41077 1.08392 1.01778 1.61502 1.20101 0.93648 0.83005 1.47544 0.88161 1.26216 0.96623 1.02840 0.95881 1.69713 1.07135 1.30066 1.47504 0.84752 0.78298 0.76348 0.78368 1.19103 1.19596 1.19608 0.90164 0.91736 0.89099 0.79721 0.74810 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.54 9.76 71.24 0.70 -1.85 14 2 C -0.03 -1.06 6.81 42.80 0.29 -0.77 14 3 N -0.39 -15.29 10.41 -182.52 -1.90 -17.19 14 4 C -0.08 -2.78 11.00 84.69 0.93 -1.85 14 5 C 0.18 7.41 7.28 84.69 0.62 8.02 14 6 Cl -0.03 -1.00 29.13 -2.72 -0.08 -1.08 14 7 N -0.55 -25.88 9.25 -183.51 -1.70 -27.58 14 8 C 0.31 14.48 7.41 133.05 0.99 15.47 14 9 N -0.52 -25.47 5.32 -188.93 -1.01 -26.48 14 10 C -0.31 -16.31 9.71 84.04 0.82 -15.49 14 11 H 0.10 5.46 7.09 -2.92 -0.02 5.44 14 12 C -0.01 -0.66 5.50 84.87 0.47 -0.19 14 13 N -0.91 -45.97 13.05 21.65 0.28 -45.69 14 14 Si 1.00 40.05 29.55 68.60 2.03 42.08 14 15 H -0.27 -10.72 7.11 99.48 0.71 -10.02 14 16 H -0.27 -10.48 7.11 99.48 0.71 -9.77 14 17 H -0.27 -10.49 7.11 99.48 0.71 -9.78 14 18 H 0.08 2.40 8.14 -2.39 -0.02 2.38 14 19 H 0.06 2.13 6.54 -2.39 -0.02 2.11 14 20 H 0.09 2.56 8.14 -2.39 -0.02 2.54 14 21 H 0.19 5.35 8.06 -2.91 -0.02 5.32 14 22 H 0.41 19.52 5.87 -92.71 -0.54 18.97 14 23 H 0.28 13.40 8.31 -92.71 -0.77 12.63 14 Total: -1.00 -55.91 227.69 3.14 -52.77 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.71 Total: 19.83 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.80 Total: 3.34 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -4.32 Total: -116.94 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -55.91 3.14 -52.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181588.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.549 kcal (2) G-P(sol) polarization free energy of solvation -55.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds