Wall clock time and date at job start Sun Mar 29 2020 21:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86795 * 120.00217 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99864 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99493 * 3 2 1 7 7 C 1.38767 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00281 * 180.02562 * 7 2 1 9 9 N 1.36871 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.38892 * 119.99745 * 180.27693 * 9 7 2 11 11 N 1.32448 * 119.75347 * 359.72423 * 10 9 7 12 12 C 1.31982 * 121.67883 * 180.02562 * 11 10 9 13 13 Cl 1.73604 * 119.50723 * 179.97438 * 12 11 10 14 14 C 1.38345 * 120.99006 * 359.97190 * 12 11 10 15 15 C 1.38712 * 119.39153 * 0.02798 * 14 12 11 16 16 C 1.38986 * 118.45966 * 359.72486 * 15 14 12 17 17 N 1.39833 * 120.51471 * 180.28926 * 16 15 14 18 18 H 0.96999 * 119.99751 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99649 * 359.97438 * 9 7 2 20 20 H 1.08001 * 120.30272 * 179.97438 * 14 12 11 21 21 H 1.07999 * 120.76940 * 180.02562 * 15 14 12 22 22 H 0.96999 * 120.00007 * 180.23073 * 17 16 15 23 23 H 0.96994 * 119.99462 * 0.22793 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1037 1.6963 1.2126 7 6 2.0098 -1.2018 0.0005 8 1 3.0898 -1.2019 0.0010 9 7 1.3255 -2.3871 0.0005 10 6 2.0199 -3.5899 0.0069 11 7 3.3444 -3.5842 0.0074 12 6 4.0423 -4.7044 0.0128 13 17 5.7768 -4.6311 0.0125 14 6 3.4125 -5.9361 0.0188 15 6 2.0265 -5.9919 0.0185 16 6 1.3155 -4.7977 0.0180 17 7 -0.0828 -4.8039 0.0238 18 1 -0.4850 0.8401 -0.0004 19 1 0.3554 -2.3870 0.0005 20 1 3.9946 -6.8458 0.0228 21 1 1.5118 -6.9414 0.0235 22 1 -0.5715 -3.9660 0.0200 23 1 -0.5640 -5.6460 0.0315 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183417.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:39 Heat of formation + Delta-G solvation = 32.920114 kcal Electronic energy + Delta-G solvation = -11691.259163 eV Core-core repulsion = 9372.157731 eV Total energy + Delta-G solvation = -2319.101432 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.30924 -36.04022 -35.03065 -34.05742 -31.96969 -29.90794 -27.45991 -24.90320 -22.08681 -21.50879 -18.25438 -17.09656 -16.25157 -15.88310 -14.87946 -14.31167 -13.99441 -13.79870 -13.36113 -12.39608 -11.78094 -11.73448 -11.54161 -11.22914 -10.58144 -10.54155 -10.47101 -10.29539 -9.77978 -8.87482 -8.47512 -8.01608 -6.58719 -6.45893 -3.72727 2.20855 2.29928 2.74704 3.19702 3.21616 3.24243 4.05915 4.45868 4.62599 4.86478 5.21878 5.52663 5.91608 6.16948 6.34851 6.67368 6.89976 7.24573 7.45150 7.61619 8.10869 8.29890 8.61393 8.91463 9.22893 9.62222 10.57980 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.010669 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.934010 B = 2623.842393 C = 3555.924060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.276 4.276 8 H 0.114 0.886 9 N -0.534 5.534 10 C 0.346 3.654 11 N -0.534 5.534 12 C 0.198 3.802 13 Cl -0.078 7.078 14 C -0.242 4.242 15 C -0.117 4.117 16 C 0.079 3.921 17 N -0.881 5.881 18 H 0.275 0.725 19 H 0.403 0.597 20 H 0.118 0.882 21 H 0.120 0.880 22 H 0.393 0.607 23 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 -7.647 0.040 7.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.188 4.188 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.407 4.407 8 H 0.131 0.869 9 N -0.145 5.145 10 C 0.099 3.901 11 N -0.259 5.259 12 C 0.032 3.968 13 Cl -0.050 7.050 14 C -0.271 4.271 15 C -0.147 4.147 16 C -0.030 4.030 17 N -0.426 5.426 18 H 0.085 0.915 19 H 0.240 0.760 20 H 0.136 0.864 21 H 0.138 0.862 22 H 0.221 0.779 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.889 -6.351 0.032 6.626 hybrid contribution -0.712 0.085 0.007 0.717 sum 1.178 -6.266 0.039 6.375 Atomic orbital electron populations 1.69653 1.05997 1.28738 1.49399 1.25351 0.95797 1.00067 0.97608 0.85794 0.78697 0.79849 0.79308 1.19691 1.20917 1.19687 1.19914 0.93882 0.81829 1.45048 0.86860 1.40746 1.07514 1.01749 1.64526 1.17601 0.86951 0.85184 1.00351 1.66161 1.05664 1.29404 1.24642 1.20721 0.84695 0.89623 1.01776 1.98308 1.10848 1.98788 1.97050 1.20591 0.93789 0.95868 1.16859 1.20245 0.93067 0.95256 1.06176 1.18025 0.84582 0.93298 1.07134 1.42017 1.02706 1.09860 1.87995 0.91513 0.76012 0.86393 0.86193 0.77873 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.69 13.05 55.49 0.72 -22.97 14 2 C 0.01 0.37 5.50 -17.45 -0.10 0.28 14 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 14 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 14 7 C -0.28 -7.37 9.70 -15.11 -0.15 -7.52 14 8 H 0.11 3.12 7.08 -52.49 -0.37 2.75 14 9 N -0.53 -13.23 5.40 -11.02 -0.06 -13.28 14 10 C 0.35 8.08 7.45 -154.83 -1.15 6.92 14 11 N -0.53 -12.82 9.07 -9.37 -0.08 -12.90 14 12 C 0.20 4.17 7.27 -17.45 -0.13 4.04 14 13 Cl -0.08 -1.43 29.10 -51.86 -1.51 -2.94 14 14 C -0.24 -4.46 9.86 -39.37 -0.39 -4.84 14 15 C -0.12 -2.06 10.04 -39.13 -0.39 -2.45 14 16 C 0.08 1.54 6.81 -83.34 -0.57 0.97 14 17 N -0.88 -14.03 9.08 32.64 0.30 -13.73 14 18 H 0.28 6.89 8.31 -40.82 -0.34 6.55 14 19 H 0.40 9.58 6.05 -40.82 -0.25 9.33 14 20 H 0.12 1.86 8.06 -52.49 -0.42 1.43 14 21 H 0.12 1.70 8.06 -52.49 -0.42 1.28 14 22 H 0.39 6.38 7.02 -40.82 -0.29 6.10 14 23 H 0.39 4.91 8.86 -40.82 -0.36 4.54 14 LS Contribution 226.65 15.07 3.42 3.42 Total: -1.00 -27.89 226.65 -6.36 -34.25 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -1.25 Total: 15.19 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.87 Total: -2.60 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.88 Total: -62.88 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.51 Total: -2.94 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -27.89 -6.36 -34.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183417.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.173 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds