Wall clock time and date at job start Sun Mar 29 2020 21:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86795 * 120.00217 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99864 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99493 * 3 2 1 7 7 C 1.38767 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00281 * 180.02562 * 7 2 1 9 9 N 1.36871 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.38892 * 119.99745 * 180.27693 * 9 7 2 11 11 N 1.32448 * 119.75347 * 359.72423 * 10 9 7 12 12 C 1.31982 * 121.67883 * 180.02562 * 11 10 9 13 13 Cl 1.73604 * 119.50723 * 179.97438 * 12 11 10 14 14 C 1.38345 * 120.99006 * 359.97190 * 12 11 10 15 15 C 1.38712 * 119.39153 * 0.02798 * 14 12 11 16 16 C 1.38986 * 118.45966 * 359.72486 * 15 14 12 17 17 N 1.39833 * 120.51471 * 180.28926 * 16 15 14 18 18 H 0.96999 * 119.99751 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99649 * 359.97438 * 9 7 2 20 20 H 1.08001 * 120.30272 * 179.97438 * 14 12 11 21 21 H 1.07999 * 120.76940 * 180.02562 * 15 14 12 22 22 H 0.96999 * 120.00007 * 180.23073 * 17 16 15 23 23 H 0.96994 * 119.99462 * 0.22793 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1037 1.6963 1.2126 7 6 2.0098 -1.2018 0.0005 8 1 3.0898 -1.2019 0.0010 9 7 1.3255 -2.3871 0.0005 10 6 2.0199 -3.5899 0.0069 11 7 3.3444 -3.5842 0.0074 12 6 4.0423 -4.7044 0.0128 13 17 5.7768 -4.6311 0.0125 14 6 3.4125 -5.9361 0.0188 15 6 2.0265 -5.9919 0.0185 16 6 1.3155 -4.7977 0.0180 17 7 -0.0828 -4.8039 0.0238 18 1 -0.4850 0.8401 -0.0004 19 1 0.3554 -2.3870 0.0005 20 1 3.9946 -6.8458 0.0228 21 1 1.5118 -6.9414 0.0235 22 1 -0.5715 -3.9660 0.0200 23 1 -0.5640 -5.6460 0.0315 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183417.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:38 Heat of formation + Delta-G solvation = 13.969488 kcal Electronic energy + Delta-G solvation = -11692.080924 eV Core-core repulsion = 9372.157731 eV Total energy + Delta-G solvation = -2319.923193 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.95108 -37.59549 -36.71204 -35.56390 -33.74881 -31.53471 -29.06448 -26.71206 -23.70224 -23.14184 -20.00433 -18.74020 -17.81805 -17.40208 -16.52209 -15.97613 -15.64160 -15.47011 -15.04311 -13.90145 -13.40944 -13.36088 -13.21569 -12.89597 -12.38369 -12.15539 -12.08895 -11.98901 -11.36729 -10.61884 -10.14468 -9.65010 -8.44677 -8.04453 -5.65676 0.60987 0.72848 1.20269 1.41832 1.48573 1.52158 2.30031 2.89716 3.02886 3.22806 3.39644 4.04065 4.41599 4.65078 4.73775 5.18534 5.34357 5.45447 5.74934 5.90289 6.57241 6.80235 7.06431 7.16260 7.43952 7.87413 8.73115 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.010669 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.934010 B = 2623.842393 C = 3555.924060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.029 4.029 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.296 4.296 8 H 0.093 0.907 9 N -0.564 5.564 10 C 0.326 3.674 11 N -0.566 5.566 12 C 0.159 3.841 13 Cl -0.063 7.063 14 C -0.209 4.209 15 C -0.110 4.110 16 C 0.081 3.919 17 N -0.866 5.866 18 H 0.274 0.726 19 H 0.402 0.598 20 H 0.155 0.845 21 H 0.168 0.832 22 H 0.392 0.608 23 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -9.975 0.054 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.227 4.227 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.427 4.427 8 H 0.110 0.890 9 N -0.180 5.180 10 C 0.081 3.919 11 N -0.291 5.291 12 C -0.006 4.006 13 Cl -0.035 7.035 14 C -0.237 4.237 15 C -0.141 4.141 16 C -0.029 4.029 17 N -0.411 5.411 18 H 0.083 0.917 19 H 0.239 0.761 20 H 0.172 0.828 21 H 0.186 0.814 22 H 0.220 0.780 23 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.127 -8.771 0.047 9.025 hybrid contribution -0.637 0.383 0.004 0.743 sum 1.490 -8.388 0.051 8.520 Atomic orbital electron populations 1.69722 1.06714 1.28996 1.51687 1.25984 0.96604 1.02281 0.97857 0.84969 0.77592 0.76879 0.78870 1.19819 1.20057 1.19815 1.19801 0.93154 0.83361 1.46393 0.88951 1.40568 1.07232 1.01616 1.68560 1.18090 0.87304 0.86177 1.00289 1.66086 1.06657 1.31622 1.24690 1.21175 0.85705 0.89962 1.03729 1.98305 1.09355 1.98768 1.97057 1.21168 0.94574 0.96162 1.11794 1.20828 0.92862 0.96368 1.03999 1.18219 0.86143 0.92680 1.05846 1.41968 1.01411 1.11011 1.86750 0.91662 0.76115 0.82761 0.81435 0.77961 0.75830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.49 13.05 21.64 0.28 -50.21 14 2 C -0.03 -1.54 5.50 84.85 0.47 -1.07 14 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 14 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 14 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 14 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 14 7 C -0.30 -16.44 9.70 84.03 0.82 -15.63 14 8 H 0.09 5.35 7.08 -2.91 -0.02 5.32 14 9 N -0.56 -28.65 5.40 -188.78 -1.02 -29.67 14 10 C 0.33 15.17 7.45 133.26 0.99 16.16 14 11 N -0.57 -27.09 9.07 -183.57 -1.66 -28.75 14 12 C 0.16 6.38 7.27 84.70 0.62 7.00 14 13 Cl -0.06 -2.21 29.10 -2.72 -0.08 -2.28 14 14 C -0.21 -6.83 9.86 22.41 0.22 -6.61 14 15 C -0.11 -3.35 10.04 22.56 0.23 -3.13 14 16 C 0.08 2.99 6.81 38.43 0.26 3.25 14 17 N -0.87 -25.43 9.08 -50.66 -0.46 -25.89 14 18 H 0.27 14.11 8.31 -92.71 -0.77 13.34 14 19 H 0.40 19.70 6.05 -92.71 -0.56 19.14 14 20 H 0.15 3.94 8.06 -2.91 -0.02 3.92 14 21 H 0.17 3.59 8.06 -2.91 -0.02 3.57 14 22 H 0.39 12.32 7.02 -92.71 -0.65 11.67 14 23 H 0.41 8.76 8.86 -92.71 -0.82 7.94 14 Total: -1.00 -61.41 226.65 1.93 -59.47 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.75 Total: 31.88 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 3.60 Total: -0.02 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -2.86 Total: -134.52 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.28 kcal Total: -61.41 1.93 -59.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183417.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.444 kcal (2) G-P(sol) polarization free energy of solvation -61.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds