Wall clock time and date at job start Sun Mar 29 2020 21:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39430 * 120.03611 * 7.81671 * 3 2 1 5 5 C 1.39436 * 119.87952 * 179.97438 * 4 3 2 6 6 C 1.43195 * 120.03104 * 179.97438 * 5 4 3 7 7 N 5.90815 * 144.59219 * 7.80792 * 2 1 3 8 8 C 1.39562 * 119.93533 * 359.97438 * 5 4 3 9 9 C 1.38915 * 120.06459 * 0.02562 * 8 5 4 10 10 N 1.39355 * 119.94122 * 179.69742 * 9 8 5 11 11 C 1.36837 * 120.00329 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00252 * 180.02562 * 11 10 9 14 14 N 1.31588 * 119.99884 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47447 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47458 * 119.99919 * 15 13 11 18 18 H 1.48507 * 109.46818 * 239.99410 * 15 13 11 19 19 C 1.38911 * 120.11963 * 359.97438 * 9 8 5 20 20 H 1.08004 * 120.06087 * 359.95018 * 4 3 2 21 21 H 1.08000 * 119.97355 * 180.02562 * 8 5 4 22 22 H 0.97007 * 119.99920 * 0.02562 * 10 9 8 23 23 H 0.96995 * 119.99833 * 180.02562 * 14 13 11 24 24 H 1.08006 * 119.96564 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 -1.1949 -0.1642 5 6 4.6608 -1.1904 -0.1642 6 6 5.3814 -2.4164 -0.3320 7 7 5.9514 -3.3914 -0.4650 8 6 5.3534 0.0101 -0.0005 9 6 4.6550 1.1998 0.1629 10 7 5.3492 2.3962 0.3324 11 6 4.6625 3.5687 0.4939 12 1 3.5825 3.5670 0.4896 13 6 5.3539 4.7604 0.6623 14 7 6.6698 4.7626 0.6670 15 14 4.4165 6.3609 0.8835 16 1 2.9571 6.0897 0.8412 17 1 4.7703 6.9649 2.1931 18 1 4.7768 7.3006 -0.2085 19 6 3.2659 1.1982 0.1633 20 1 2.7284 -2.1228 -0.2907 21 1 6.4334 0.0144 -0.0008 22 1 6.3192 2.3978 0.3359 23 1 7.1530 5.5953 0.7850 24 1 2.7254 2.1245 0.2909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187315.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:26 Heat of formation + Delta-G solvation = 80.169150 kcal Electronic energy + Delta-G solvation = -12255.305205 eV Core-core repulsion = 9940.685494 eV Total energy + Delta-G solvation = -2314.619711 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.10914 -36.40341 -36.35218 -34.92972 -32.28545 -30.99459 -28.61294 -25.18487 -23.55161 -22.57604 -19.25330 -18.25464 -16.15481 -15.82354 -15.45421 -15.02846 -14.24683 -13.86775 -13.70409 -13.19180 -12.93774 -12.70593 -12.62487 -12.32765 -12.10052 -11.85058 -11.35700 -11.21432 -11.07238 -10.53694 -10.42546 -10.35079 -9.06403 -8.43126 -7.17434 -6.87051 -4.03988 1.22475 1.66439 2.92813 2.93812 3.04521 3.07606 3.08774 3.26447 3.69736 3.81425 4.15602 4.44039 4.52061 4.90580 4.93190 5.61709 5.75792 5.82857 6.22296 6.32547 6.78094 6.80688 6.90733 7.05768 7.19277 7.50311 7.81841 7.86383 8.43811 8.95711 9.15566 10.27870 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.027706 B = 0.008402 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.379778 B = 3331.841497 C = 4332.376108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.274 3.726 3 C 0.026 3.974 4 C -0.166 4.166 5 C 0.026 3.974 6 C 0.274 3.726 7 N -0.447 5.447 8 C -0.165 4.165 9 C 0.195 3.805 10 N -0.540 5.540 11 C -0.306 4.306 12 H 0.108 0.892 13 C 0.026 3.974 14 N -0.878 5.878 15 Si 0.934 3.066 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.149 4.149 20 H 0.118 0.882 21 H 0.121 0.879 22 H 0.405 0.595 23 H 0.280 0.720 24 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -2.283 -0.330 3.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.041 4.041 3 C 0.021 3.979 4 C -0.194 4.194 5 C 0.021 3.979 6 C -0.041 4.041 7 N -0.123 5.123 8 C -0.193 4.193 9 C 0.071 3.929 10 N -0.139 5.139 11 C -0.436 4.436 12 H 0.126 0.874 13 C -0.180 4.180 14 N -0.513 5.513 15 Si 0.760 3.240 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.177 4.177 20 H 0.136 0.864 21 H 0.139 0.861 22 H 0.241 0.759 23 H 0.090 0.910 24 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.651 -3.252 -0.460 4.220 hybrid contribution 0.377 1.283 0.175 1.349 sum -2.274 -1.969 -0.284 3.021 Atomic orbital electron populations 1.81163 1.12393 1.08623 1.10017 1.25909 0.92855 0.92558 0.92762 1.15361 0.83161 0.94401 1.04981 1.20104 0.91390 0.96392 1.11517 1.15222 0.91306 0.86143 1.05185 1.25966 0.92647 0.92773 0.92718 1.81222 1.09477 1.11396 1.10210 1.20341 0.98926 0.90010 1.10018 1.17268 0.90920 0.86264 0.98492 1.41113 1.08517 1.03043 1.61264 1.19867 0.93340 0.83723 1.46635 0.87395 1.25387 0.95791 1.00239 0.96565 1.69671 1.06225 1.29479 1.45948 0.85714 0.79595 0.80378 0.78314 1.18850 1.20280 1.20286 1.20560 0.92601 0.96599 1.07914 0.86376 0.86140 0.75940 0.91027 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.78 18.54 41.84 0.78 -7.01 14 2 C 0.27 4.38 15.32 -22.47 -0.34 4.04 14 3 C 0.03 0.39 5.72 -107.03 -0.61 -0.22 14 4 C -0.17 -2.38 9.45 -38.69 -0.37 -2.74 14 5 C 0.03 0.39 5.72 -107.03 -0.61 -0.22 14 6 C 0.27 4.21 15.32 -22.44 -0.34 3.86 14 7 N -0.45 -7.55 18.55 41.88 0.78 -6.77 14 8 C -0.16 -2.59 9.59 -38.84 -0.37 -2.96 14 9 C 0.19 3.44 6.61 -83.94 -0.55 2.88 14 10 N -0.54 -10.95 5.43 -9.67 -0.05 -11.00 14 11 C -0.31 -6.69 9.55 -15.11 -0.14 -6.84 14 12 H 0.11 2.24 5.67 -52.48 -0.30 1.95 14 13 C 0.03 0.58 5.50 -17.45 -0.10 0.48 14 14 N -0.88 -20.82 13.05 55.49 0.72 -20.10 14 15 Si 0.93 17.76 29.55 -169.99 -5.02 12.73 14 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 14 18 H -0.28 -5.32 7.11 56.52 0.40 -4.92 14 19 C -0.15 -2.50 9.00 -38.84 -0.35 -2.85 14 20 H 0.12 1.50 8.06 -52.48 -0.42 1.08 14 21 H 0.12 1.75 8.06 -52.49 -0.42 1.33 14 22 H 0.40 8.35 7.89 -40.82 -0.32 8.03 14 23 H 0.28 6.29 8.31 -40.82 -0.34 5.95 14 24 H 0.13 2.24 5.93 -52.48 -0.31 1.93 14 LS Contribution 242.14 15.07 3.65 3.65 Total: -1.00 -23.30 242.14 -3.86 -27.16 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -0.91 Total: 5.91 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.80 Total: -4.57 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 2.22 Total: -44.88 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.02 Total: 12.73 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -23.30 -3.86 -27.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187315.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.328 kcal (2) G-P(sol) polarization free energy of solvation -23.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds