Wall clock time and date at job start Sun Mar 29 2020 21:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39430 * 120.03611 * 7.81671 * 3 2 1 5 5 C 1.39436 * 119.87952 * 179.97438 * 4 3 2 6 6 C 1.43195 * 120.03104 * 179.97438 * 5 4 3 7 7 N 5.90815 * 144.59219 * 7.80792 * 2 1 3 8 8 C 1.39562 * 119.93533 * 359.97438 * 5 4 3 9 9 C 1.38915 * 120.06459 * 0.02562 * 8 5 4 10 10 N 1.39355 * 119.94122 * 179.69742 * 9 8 5 11 11 C 1.36837 * 120.00329 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00252 * 180.02562 * 11 10 9 14 14 N 1.31588 * 119.99884 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47447 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47458 * 119.99919 * 15 13 11 18 18 H 1.48507 * 109.46818 * 239.99410 * 15 13 11 19 19 C 1.38911 * 120.11963 * 359.97438 * 9 8 5 20 20 H 1.08004 * 120.06087 * 359.95018 * 4 3 2 21 21 H 1.08000 * 119.97355 * 180.02562 * 8 5 4 22 22 H 0.97007 * 119.99920 * 0.02562 * 10 9 8 23 23 H 0.96995 * 119.99833 * 180.02562 * 14 13 11 24 24 H 1.08006 * 119.96564 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 -1.1949 -0.1642 5 6 4.6608 -1.1904 -0.1642 6 6 5.3814 -2.4164 -0.3320 7 7 5.9514 -3.3914 -0.4650 8 6 5.3534 0.0101 -0.0005 9 6 4.6550 1.1998 0.1629 10 7 5.3492 2.3962 0.3324 11 6 4.6625 3.5687 0.4939 12 1 3.5825 3.5670 0.4896 13 6 5.3539 4.7604 0.6623 14 7 6.6698 4.7626 0.6670 15 14 4.4165 6.3609 0.8835 16 1 2.9571 6.0897 0.8412 17 1 4.7703 6.9649 2.1931 18 1 4.7768 7.3006 -0.2085 19 6 3.2659 1.1982 0.1633 20 1 2.7284 -2.1228 -0.2907 21 1 6.4334 0.0144 -0.0008 22 1 6.3192 2.3978 0.3359 23 1 7.1530 5.5953 0.7850 24 1 2.7254 2.1245 0.2909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187315.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:26 Heat of formation + Delta-G solvation = 68.846770 kcal Electronic energy + Delta-G solvation = -12255.796180 eV Core-core repulsion = 9940.685494 eV Total energy + Delta-G solvation = -2315.110686 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.50527 -37.76376 -37.71573 -36.33308 -33.79707 -32.35425 -30.05180 -26.70270 -24.93900 -23.93800 -20.63610 -19.77630 -17.49446 -17.22723 -16.86339 -16.48831 -15.69080 -15.20853 -15.15883 -14.52463 -14.25540 -14.04049 -13.95902 -13.76837 -13.56244 -13.26504 -12.84722 -12.66397 -12.39581 -12.01487 -11.84620 -11.83709 -10.60483 -9.76331 -8.62728 -8.45030 -5.68123 -0.13043 0.37222 1.45949 1.50430 1.60253 1.65178 1.78496 1.90638 2.30798 2.40212 2.79888 3.01488 3.19301 3.39813 3.50478 4.34195 4.42013 4.48790 4.82942 4.93893 5.31538 5.48148 5.53426 5.57601 5.75325 6.03053 6.54003 6.56172 6.86554 7.49752 7.61976 8.72373 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.027706 B = 0.008402 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.379778 B = 3331.841497 C = 4332.376108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.290 3.710 3 C 0.028 3.972 4 C -0.126 4.126 5 C 0.029 3.971 6 C 0.291 3.709 7 N -0.466 5.466 8 C -0.149 4.149 9 C 0.195 3.805 10 N -0.573 5.573 11 C -0.312 4.312 12 H 0.112 0.888 13 C -0.024 4.024 14 N -0.924 5.924 15 Si 0.987 3.013 16 H -0.257 1.257 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.149 4.149 20 H 0.147 0.853 21 H 0.133 0.867 22 H 0.399 0.601 23 H 0.274 0.726 24 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -4.153 -0.591 5.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.025 4.025 3 C 0.024 3.976 4 C -0.153 4.153 5 C 0.025 3.975 6 C -0.023 4.023 7 N -0.142 5.142 8 C -0.177 4.177 9 C 0.076 3.924 10 N -0.177 5.177 11 C -0.442 4.442 12 H 0.130 0.870 13 C -0.224 4.224 14 N -0.562 5.562 15 Si 0.812 3.188 16 H -0.181 1.181 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.177 4.177 20 H 0.165 0.835 21 H 0.151 0.849 22 H 0.233 0.767 23 H 0.083 0.917 24 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.922 -5.187 -0.730 6.543 hybrid contribution 0.598 1.433 0.196 1.566 sum -3.323 -3.753 -0.534 5.042 Atomic orbital electron populations 1.81204 1.13049 1.09220 1.10725 1.25782 0.92614 0.91958 0.92112 1.15254 0.82887 0.94177 1.05291 1.20483 0.91201 0.97039 1.06621 1.15139 0.91409 0.85645 1.05325 1.25759 0.92145 0.92339 0.92079 1.81273 1.09950 1.12123 1.10846 1.20535 0.99832 0.89544 1.07802 1.17527 0.91275 0.86291 0.97304 1.41003 1.08075 1.03271 1.65362 1.20052 0.93566 0.84483 1.46104 0.87050 1.26011 0.96361 1.02533 0.97492 1.69760 1.07260 1.29421 1.49790 0.84904 0.78829 0.77560 0.77460 1.18108 1.20899 1.20906 1.20630 0.92435 0.97186 1.07437 0.83491 0.84872 0.76677 0.91652 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.03 18.54 19.00 0.35 -14.67 14 2 C 0.29 8.35 15.32 88.33 1.35 9.70 14 3 C 0.03 0.77 5.72 -21.43 -0.12 0.65 14 4 C -0.13 -3.02 9.45 22.85 0.22 -2.80 14 5 C 0.03 0.75 5.72 -21.43 -0.12 0.63 14 6 C 0.29 7.86 15.32 88.32 1.35 9.21 14 7 N -0.47 -14.27 18.55 19.02 0.35 -13.92 14 8 C -0.15 -4.27 9.59 22.75 0.22 -4.05 14 9 C 0.19 6.58 6.61 38.27 0.25 6.83 14 10 N -0.57 -23.36 5.43 -184.50 -1.00 -24.37 14 11 C -0.31 -13.85 9.55 84.05 0.80 -13.05 14 12 H 0.11 4.65 5.67 -2.91 -0.02 4.63 14 13 C -0.02 -1.11 5.50 84.86 0.47 -0.65 14 14 N -0.92 -45.62 13.05 21.65 0.28 -45.34 14 15 Si 0.99 37.36 29.55 68.60 2.03 39.39 14 16 H -0.26 -9.21 7.11 99.48 0.71 -8.51 14 17 H -0.28 -10.78 7.11 99.48 0.71 -10.07 14 18 H -0.28 -10.78 7.11 99.48 0.71 -10.08 14 19 C -0.15 -4.69 9.00 22.75 0.20 -4.49 14 20 H 0.15 2.86 8.06 -2.91 -0.02 2.83 14 21 H 0.13 3.55 8.06 -2.91 -0.02 3.53 14 22 H 0.40 16.84 7.89 -92.70 -0.73 16.11 14 23 H 0.27 12.97 8.31 -92.71 -0.77 12.20 14 24 H 0.13 4.16 5.93 -2.91 -0.02 4.14 14 Total: -1.00 -49.30 242.14 7.17 -42.13 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.54 Total: 14.79 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 4.62 Total: 1.99 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -0.02 Total: -98.29 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -49.30 7.17 -42.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187315.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.974 kcal (2) G-P(sol) polarization free energy of solvation -49.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds