Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36815 * 120.00203 * 2 1 4 4 H 1.07999 * 120.00119 * 159.36153 * 3 2 1 5 5 C 1.38803 * 120.00008 * 339.35893 * 3 2 1 6 6 N 1.31593 * 119.99744 * 347.68364 * 5 3 2 7 7 Si 1.86799 * 119.99946 * 167.95939 * 5 3 2 8 8 H 1.48494 * 109.47237 * 90.00618 * 7 5 3 9 9 H 1.48504 * 109.46536 * 209.99978 * 7 5 3 10 10 H 1.48495 * 109.47068 * 329.99694 * 7 5 3 11 11 C 1.39382 * 119.99863 * 179.97438 * 2 1 3 12 12 C 1.39359 * 120.89405 * 270.00022 * 11 2 1 13 13 N 1.32268 * 119.00426 * 180.02562 * 12 11 2 14 14 C 1.31819 * 120.94630 * 359.97438 * 13 12 11 15 15 N 1.31819 * 121.98605 * 0.03158 * 14 13 12 16 16 C 1.32341 * 120.88517 * 359.65531 * 15 14 13 17 17 Cl 1.73609 * 120.51643 * 180.31596 * 16 15 14 18 18 H 1.09005 * 109.47066 * 84.90144 * 1 2 3 19 19 H 1.08997 * 109.47051 * 204.89786 * 1 2 3 20 20 H 1.08997 * 109.46785 * 324.90048 * 1 2 3 21 21 H 0.96998 * 120.00012 * 179.97438 * 6 5 3 22 22 H 1.07999 * 120.49784 * 359.97438 * 12 11 2 23 23 H 1.08004 * 119.00789 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.1772 1.2148 0.3297 5 6 1.5220 2.3483 -0.4237 6 7 0.3656 2.2824 -1.0483 7 14 2.3232 4.0071 -0.1142 8 1 3.1982 4.3561 -1.2621 9 1 1.2711 5.0439 0.0393 10 1 3.1369 3.9401 1.1262 11 6 2.1619 -1.2071 0.0005 12 6 2.5197 -1.8263 1.1967 13 7 3.1811 -2.9709 1.1536 14 6 3.5012 -3.5258 0.0015 15 7 3.1822 -2.9736 -1.1521 16 6 2.5151 -1.8315 -1.1971 17 17 2.0928 -1.1168 -2.7219 18 1 -0.3633 0.0913 -1.0236 19 1 -0.3633 -0.9321 0.4326 20 1 -0.3633 0.8408 0.5909 21 1 -0.0729 3.0955 -1.3441 22 1 2.2615 -1.3778 2.1446 23 1 4.0412 -4.4612 0.0029 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799121.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = 69.274408 kcal Electronic energy + Delta-G solvation = -12042.146693 eV Core-core repulsion = 9724.621701 eV Total energy + Delta-G solvation = -2317.524992 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34459 -36.19057 -35.77561 -33.01033 -31.93412 -29.30272 -26.12972 -24.40616 -23.82576 -21.44975 -17.35717 -17.19682 -17.15287 -15.61647 -14.48146 -14.08997 -13.71661 -13.22018 -13.15140 -12.23447 -11.60814 -11.54769 -11.13182 -10.90780 -10.69944 -10.34984 -10.25607 -10.02969 -9.85731 -9.15724 -8.68730 -8.47620 -7.15190 -5.96092 -3.46918 1.41028 1.48663 2.45754 3.28309 3.35128 3.36611 4.19900 4.29989 4.60805 4.81406 4.94575 5.22721 5.52578 5.82279 6.25745 6.53195 6.73417 7.16968 7.27298 7.55549 7.62397 8.15890 8.46637 8.94968 9.59918 9.98283 11.07870 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.011821 C = 0.010638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.509643 B = 2368.034673 C = 2631.410027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.548 5.548 3 C -0.269 4.269 4 H 0.073 0.927 5 C 0.020 3.980 6 N -0.892 5.892 7 Si 0.911 3.089 8 H -0.284 1.284 9 H -0.287 1.287 10 H -0.277 1.277 11 C 0.135 3.865 12 C 0.129 3.871 13 N -0.520 5.520 14 C 0.272 3.728 15 N -0.525 5.525 16 C 0.191 3.809 17 Cl -0.009 7.009 18 H 0.043 0.957 19 H 0.000 1.000 20 H 0.057 0.943 21 H 0.258 0.742 22 H 0.170 0.830 23 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 -6.205 1.428 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.266 5.266 3 C -0.396 4.396 4 H 0.090 0.910 5 C -0.181 4.181 6 N -0.534 5.534 7 Si 0.740 3.260 8 H -0.211 1.211 9 H -0.212 1.212 10 H -0.202 1.202 11 C 0.033 3.967 12 C -0.039 4.039 13 N -0.235 5.235 14 C -0.016 4.016 15 N -0.243 5.243 16 C 0.015 3.985 17 Cl 0.019 6.981 18 H 0.062 0.938 19 H 0.019 0.981 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.187 0.813 23 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.229 -6.772 1.221 7.233 hybrid contribution -0.006 1.723 -0.225 1.738 sum 2.223 -5.049 0.996 5.605 Atomic orbital electron populations 1.20996 0.80005 0.96252 1.00711 1.41416 1.02433 0.98283 1.84498 1.19092 0.97548 0.83407 1.39567 0.90952 1.25012 0.97257 0.98632 0.97214 1.70077 1.16759 1.27503 1.39093 0.86170 0.78482 0.83080 0.78302 1.21083 1.21249 1.20219 1.19303 0.95560 0.90517 0.91369 1.24041 0.91110 0.89746 0.99009 1.68207 1.13236 1.11261 1.30810 1.24525 0.96147 0.99048 0.81876 1.67620 1.13428 1.11046 1.32174 1.24229 0.94331 0.90505 0.89468 1.98414 1.90378 1.80839 1.28455 0.93845 0.98118 0.92435 0.93211 0.81339 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 8.95 59.85 0.54 4.31 14 2 N -0.55 -13.03 2.48 -120.24 -0.30 -13.33 14 3 C -0.27 -6.94 9.66 -15.12 -0.15 -7.08 14 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 14 5 C 0.02 0.51 5.12 -17.44 -0.09 0.42 14 6 N -0.89 -24.00 10.53 55.49 0.58 -23.42 14 7 Si 0.91 20.71 29.57 -169.99 -5.03 15.69 14 8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 14 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 14 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 14 11 C 0.13 2.89 5.08 -83.50 -0.42 2.46 14 12 C 0.13 2.41 11.26 -16.95 -0.19 2.22 14 13 N -0.52 -9.12 10.43 -14.39 -0.15 -9.27 14 14 C 0.27 4.50 12.27 -92.11 -1.13 3.36 14 15 N -0.53 -10.03 10.43 -11.48 -0.12 -10.15 14 16 C 0.19 4.02 7.36 -16.82 -0.12 3.89 14 17 Cl -0.01 -0.20 28.73 -51.86 -1.49 -1.69 14 18 H 0.04 1.08 7.40 -51.93 -0.38 0.70 14 19 H 0.00 0.00 8.01 -51.93 -0.42 -0.41 14 20 H 0.06 1.39 7.15 -51.93 -0.37 1.02 14 21 H 0.26 6.74 8.31 -40.82 -0.34 6.40 14 22 H 0.17 2.86 8.06 -52.49 -0.42 2.43 14 23 H 0.19 2.32 8.06 -52.48 -0.42 1.90 14 LS Contribution 228.03 15.07 3.44 3.44 Total: -1.00 -27.53 228.03 -6.20 -33.72 By element: Atomic # 1 Polarization: -3.01 SS G_CDS: -1.56 Total: -4.57 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.57 Total: 9.58 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.02 Total: -56.17 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.49 Total: -1.69 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.53 -6.20 -33.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799121.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.997 kcal (2) G-P(sol) polarization free energy of solvation -27.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds