Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36815 * 120.00203 * 2 1 4 4 H 1.07999 * 120.00119 * 159.36153 * 3 2 1 5 5 C 1.38803 * 120.00008 * 339.35893 * 3 2 1 6 6 N 1.31593 * 119.99744 * 347.68364 * 5 3 2 7 7 Si 1.86799 * 119.99946 * 167.95939 * 5 3 2 8 8 H 1.48494 * 109.47237 * 90.00618 * 7 5 3 9 9 H 1.48504 * 109.46536 * 209.99978 * 7 5 3 10 10 H 1.48495 * 109.47068 * 329.99694 * 7 5 3 11 11 C 1.39382 * 119.99863 * 179.97438 * 2 1 3 12 12 C 1.39359 * 120.89405 * 270.00022 * 11 2 1 13 13 N 1.32268 * 119.00426 * 180.02562 * 12 11 2 14 14 C 1.31819 * 120.94630 * 359.97438 * 13 12 11 15 15 N 1.31819 * 121.98605 * 0.03158 * 14 13 12 16 16 C 1.32341 * 120.88517 * 359.65531 * 15 14 13 17 17 Cl 1.73609 * 120.51643 * 180.31596 * 16 15 14 18 18 H 1.09005 * 109.47066 * 84.90144 * 1 2 3 19 19 H 1.08997 * 109.47051 * 204.89786 * 1 2 3 20 20 H 1.08997 * 109.46785 * 324.90048 * 1 2 3 21 21 H 0.96998 * 120.00012 * 179.97438 * 6 5 3 22 22 H 1.07999 * 120.49784 * 359.97438 * 12 11 2 23 23 H 1.08004 * 119.00789 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.1772 1.2148 0.3297 5 6 1.5220 2.3483 -0.4237 6 7 0.3656 2.2824 -1.0483 7 14 2.3232 4.0071 -0.1142 8 1 3.1982 4.3561 -1.2621 9 1 1.2711 5.0439 0.0393 10 1 3.1369 3.9401 1.1262 11 6 2.1619 -1.2071 0.0005 12 6 2.5197 -1.8263 1.1967 13 7 3.1811 -2.9709 1.1536 14 6 3.5012 -3.5258 0.0015 15 7 3.1822 -2.9736 -1.1521 16 6 2.5151 -1.8315 -1.1971 17 17 2.0928 -1.1168 -2.7219 18 1 -0.3633 0.0913 -1.0236 19 1 -0.3633 -0.9321 0.4326 20 1 -0.3633 0.8408 0.5909 21 1 -0.0729 3.0955 -1.3441 22 1 2.2615 -1.3778 2.1446 23 1 4.0412 -4.4612 0.0029 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799121.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = 53.536172 kcal Electronic energy + Delta-G solvation = -12042.829154 eV Core-core repulsion = 9724.621701 eV Total energy + Delta-G solvation = -2318.207453 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.85377 -37.88706 -37.46722 -34.51139 -33.76377 -30.97709 -28.02501 -26.06667 -25.35521 -23.17239 -19.12267 -18.72844 -18.69773 -17.44923 -16.07005 -15.89192 -15.23765 -14.96525 -14.62629 -14.07501 -13.25960 -13.18599 -12.99928 -12.66696 -12.44563 -12.14126 -12.07765 -11.74308 -11.38497 -10.88708 -10.42943 -10.07566 -9.00674 -7.90138 -5.43834 -0.13864 -0.00540 0.86711 1.48394 1.50402 1.58547 2.44530 2.74356 3.21978 3.23493 3.33744 3.37323 3.90566 4.36037 4.73640 4.80888 5.24093 5.34150 5.57963 5.67218 5.78165 6.26296 7.00481 7.03126 7.73026 8.09634 9.12566 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.011821 C = 0.010638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.509643 B = 2368.034673 C = 2631.410027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.556 5.556 3 C -0.274 4.274 4 H 0.068 0.932 5 C -0.024 4.024 6 N -0.919 5.919 7 Si 0.967 3.033 8 H -0.289 1.289 9 H -0.289 1.289 10 H -0.269 1.269 11 C 0.103 3.897 12 C 0.145 3.855 13 N -0.517 5.517 14 C 0.288 3.712 15 N -0.533 5.533 16 C 0.182 3.818 17 Cl -0.022 7.022 18 H 0.018 0.982 19 H 0.025 0.975 20 H 0.039 0.961 21 H 0.253 0.747 22 H 0.187 0.813 23 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -7.386 2.389 8.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.275 5.275 3 C -0.402 4.402 4 H 0.086 0.914 5 C -0.222 4.222 6 N -0.562 5.562 7 Si 0.794 3.206 8 H -0.216 1.216 9 H -0.215 1.215 10 H -0.194 1.194 11 C 0.002 3.998 12 C -0.023 4.023 13 N -0.231 5.231 14 C 0.001 3.999 15 N -0.251 5.251 16 C 0.007 3.993 17 Cl 0.006 6.994 18 H 0.036 0.964 19 H 0.043 0.957 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.203 0.797 23 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.342 -7.991 2.189 8.934 hybrid contribution -0.273 1.889 -0.481 1.968 sum 3.069 -6.102 1.708 7.040 Atomic orbital electron populations 1.20727 0.80149 0.96636 0.98989 1.41359 1.02474 0.98727 1.84984 1.19219 0.97319 0.84595 1.39032 0.91417 1.25624 0.97857 1.01224 0.97507 1.70211 1.17919 1.27698 1.40412 0.85303 0.77492 0.79710 0.78058 1.21567 1.21457 1.19404 1.19472 0.97274 0.90780 0.92284 1.24216 0.89879 0.89526 0.98690 1.68369 1.13010 1.10658 1.31072 1.25565 0.94045 0.99575 0.80724 1.67725 1.13735 1.10325 1.33334 1.24132 0.94742 0.91444 0.89021 1.98406 1.90577 1.81204 1.29176 0.96388 0.95668 0.94197 0.93725 0.79654 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.26 8.95 127.77 1.14 9.41 14 2 N -0.56 -26.25 2.48 -534.32 -1.32 -27.57 14 3 C -0.27 -14.07 9.66 84.05 0.81 -13.26 14 4 H 0.07 3.48 7.86 -2.91 -0.02 3.45 14 5 C -0.02 -1.27 5.12 84.86 0.43 -0.84 14 6 N -0.92 -50.19 10.53 21.65 0.23 -49.97 14 7 Si 0.97 42.63 29.57 68.60 2.03 44.66 14 8 H -0.29 -12.84 7.11 99.48 0.71 -12.14 14 9 H -0.29 -12.70 7.11 99.48 0.71 -11.99 14 10 H -0.27 -11.40 7.11 99.48 0.71 -10.70 14 11 C 0.10 4.27 5.08 38.54 0.20 4.46 14 12 C 0.14 5.06 11.26 84.90 0.96 6.02 14 13 N -0.52 -16.24 10.43 -199.44 -2.08 -18.32 14 14 C 0.29 8.38 12.27 180.87 2.22 10.60 14 15 N -0.53 -19.00 10.43 -190.23 -1.98 -20.99 14 16 C 0.18 7.42 7.36 84.95 0.63 8.05 14 17 Cl -0.02 -0.94 28.73 -2.72 -0.08 -1.02 14 18 H 0.02 0.91 7.40 -2.38 -0.02 0.89 14 19 H 0.02 1.01 8.01 -2.39 -0.02 0.99 14 20 H 0.04 1.95 7.15 -2.39 -0.02 1.93 14 21 H 0.25 13.50 8.31 -92.71 -0.77 12.73 14 22 H 0.19 5.78 8.06 -2.91 -0.02 5.75 14 23 H 0.24 4.49 8.06 -2.91 -0.02 4.46 14 Total: -1.00 -57.79 228.03 4.41 -53.38 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 1.23 Total: -4.62 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 6.39 Total: 24.43 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -5.16 Total: -116.84 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -57.79 4.41 -53.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799121.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.917 kcal (2) G-P(sol) polarization free energy of solvation -57.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds