Wall clock time and date at job start Sun Mar 29 2020 21:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00515 * 2 1 4 4 H 1.07999 * 120.00299 * 152.70710 * 3 2 1 5 5 C 1.38852 * 119.99653 * 332.70679 * 3 2 1 6 6 N 1.31536 * 119.99676 * 158.93818 * 5 3 2 7 7 Si 1.86794 * 119.99937 * 339.20769 * 5 3 2 8 8 H 1.48498 * 109.47356 * 84.68018 * 7 5 3 9 9 H 1.48508 * 109.46921 * 204.67610 * 7 5 3 10 10 H 1.48500 * 109.47306 * 324.67292 * 7 5 3 11 11 C 1.38536 * 119.99625 * 179.97438 * 2 1 3 12 12 C 1.39615 * 120.52966 * 185.00166 * 11 2 1 13 13 C 1.38339 * 118.30991 * 179.97438 * 12 11 2 14 14 Cl 1.73602 * 120.41406 * 179.97438 * 13 12 11 15 15 N 1.32662 * 119.16394 * 359.97438 * 13 12 11 16 16 C 1.31796 * 121.00485 * 0.02562 * 15 13 12 17 17 N 1.31733 * 121.85873 * 359.73709 * 16 15 13 18 18 H 1.09000 * 109.46785 * 90.00140 * 1 2 3 19 19 H 1.08998 * 109.47677 * 210.00771 * 1 2 3 20 20 H 1.09001 * 109.46764 * 330.00666 * 1 2 3 21 21 H 0.96995 * 119.99594 * 180.02562 * 6 5 3 22 22 H 1.08005 * 120.84593 * 359.95594 * 12 11 2 23 23 H 1.07993 * 119.06893 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1396 1.2379 0.4289 5 6 1.5715 2.3214 -0.5514 6 7 2.0044 3.5142 -0.2051 7 14 0.1737 2.1553 -1.7793 8 1 -1.1126 2.0197 -1.0498 9 1 0.1278 3.3623 -2.6433 10 1 0.3946 0.9521 -2.6212 11 6 2.1576 -1.1998 0.0005 12 6 3.5497 -1.2150 0.1054 13 6 4.1945 -2.4390 0.1018 14 17 5.9239 -2.5215 0.2287 15 7 3.4747 -3.5486 0.0002 16 6 2.1612 -3.4993 -0.0972 17 7 1.5062 -2.3564 -0.0932 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8901 0.5137 21 1 1.6002 4.3074 -0.5900 22 1 4.1090 -0.2947 0.1869 23 1 1.6061 -4.4220 -0.1788 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800906.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:33 Heat of formation + Delta-G solvation = 42.615921 kcal Electronic energy + Delta-G solvation = -11878.810145 eV Core-core repulsion = 9560.129154 eV Total energy + Delta-G solvation = -2318.680991 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.63712 -38.53214 -37.64378 -34.62077 -33.42736 -32.22531 -28.59302 -26.93135 -24.85288 -23.24199 -19.77742 -18.79591 -18.20584 -17.24742 -16.24525 -16.13588 -15.71278 -15.24588 -14.97343 -14.57696 -14.44883 -13.55134 -13.23434 -12.67454 -12.46646 -12.32322 -12.25431 -11.54027 -11.41760 -11.04382 -10.55265 -10.11955 -9.25186 -8.66031 -6.12370 0.14332 0.40886 0.75912 1.21772 1.34149 1.40413 2.08694 2.31527 2.69123 3.10106 3.53178 3.77912 4.15355 4.35043 4.38381 4.53420 4.72992 4.75880 5.27973 5.46500 5.80052 6.10562 6.38828 6.97740 7.06887 7.51047 8.47024 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.041355 B = 0.010218 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.903048 B = 2739.624648 C = 3247.687293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.437 5.437 3 C -0.337 4.337 4 H 0.087 0.913 5 C 0.025 3.975 6 N -0.887 5.887 7 Si 0.947 3.053 8 H -0.242 1.242 9 H -0.286 1.286 10 H -0.275 1.275 11 C 0.389 3.611 12 C -0.288 4.288 13 C 0.241 3.759 14 Cl -0.026 7.026 15 N -0.603 5.603 16 C 0.351 3.649 17 N -0.604 5.604 18 H 0.050 0.950 19 H 0.095 0.905 20 H 0.077 0.923 21 H 0.286 0.714 22 H 0.134 0.866 23 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -8.250 -0.751 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.131 5.131 3 C -0.465 4.465 4 H 0.105 0.895 5 C -0.181 4.181 6 N -0.522 5.522 7 Si 0.771 3.229 8 H -0.166 1.166 9 H -0.213 1.213 10 H -0.201 1.201 11 C 0.144 3.856 12 C -0.320 4.320 13 C 0.075 3.925 14 Cl 0.002 6.998 15 N -0.329 5.329 16 C 0.061 3.939 17 N -0.333 5.333 18 H 0.068 0.932 19 H 0.113 0.887 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.152 0.848 23 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.066 -8.511 -0.789 8.794 hybrid contribution 0.430 1.190 -0.413 1.331 sum -1.636 -7.321 -1.202 7.597 Atomic orbital electron populations 1.22088 0.79522 1.04154 1.01425 1.42587 1.05110 1.01688 1.63679 1.19032 1.03614 0.84300 1.39600 0.89541 1.25885 1.00568 0.93915 0.97709 1.69841 1.43468 0.98587 1.40291 0.86020 0.80180 0.77186 0.79513 1.16630 1.21303 1.20060 1.18671 0.88138 0.86836 0.91979 1.21648 0.94567 0.98598 1.17190 1.21549 0.87457 0.89724 0.93752 1.98359 1.07061 1.98638 1.95734 1.67770 1.09185 1.30279 1.25710 1.25169 0.85845 0.95756 0.87121 1.67939 1.41226 0.97900 1.26229 0.93226 0.88693 0.90478 0.90382 0.84769 0.74926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.75 8.07 127.77 1.03 3.78 14 2 N -0.44 -20.19 2.86 -540.63 -1.55 -21.74 14 3 C -0.34 -17.41 9.40 84.04 0.79 -16.62 14 4 H 0.09 4.83 6.43 -2.91 -0.02 4.82 14 5 C 0.03 1.28 5.23 84.88 0.44 1.73 14 6 N -0.89 -47.61 13.96 21.65 0.30 -47.31 14 7 Si 0.95 39.50 24.02 68.60 1.65 41.15 14 8 H -0.24 -8.96 6.54 99.48 0.65 -8.31 14 9 H -0.29 -11.82 7.11 99.48 0.71 -11.11 14 10 H -0.28 -11.80 6.88 99.48 0.68 -11.11 14 11 C 0.39 17.17 7.35 133.14 0.98 18.15 14 12 C -0.29 -12.38 9.18 22.63 0.21 -12.17 14 13 C 0.24 9.30 7.33 84.59 0.62 9.92 14 14 Cl -0.03 -0.87 29.15 -2.72 -0.08 -0.94 14 15 N -0.60 -21.96 10.43 -191.09 -1.99 -23.95 14 16 C 0.35 11.65 12.28 180.90 2.22 13.88 14 17 N -0.60 -23.50 9.31 -197.58 -1.84 -25.34 14 18 H 0.05 1.88 5.24 -2.39 -0.01 1.87 14 19 H 0.09 3.31 7.48 -2.39 -0.02 3.29 14 20 H 0.08 2.95 6.51 -2.39 -0.02 2.94 14 21 H 0.29 14.16 8.31 -92.71 -0.77 13.39 14 22 H 0.13 6.03 6.29 -2.91 -0.02 6.01 14 23 H 0.23 5.28 8.06 -2.91 -0.02 5.26 14 Total: -1.00 -56.37 217.43 3.95 -52.42 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.17 Total: 7.04 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.29 Total: 18.67 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -5.08 Total: -118.34 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.65 Total: 41.15 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Total: -56.37 3.95 -52.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800906.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.039 kcal (2) G-P(sol) polarization free energy of solvation -56.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds