Wall clock time and date at job start Sun Mar 29 2020 21:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46836 * 2 1 4 4 C 1.53002 * 109.47095 * 240.00460 * 2 1 3 5 5 C 1.53000 * 109.46894 * 174.99656 * 4 2 1 6 6 C 1.50701 * 109.46970 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00223 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00248 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99764 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00434 * 179.72573 * 8 6 5 11 11 H 1.48500 * 109.46845 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47547 * 119.99554 * 10 8 6 13 13 H 1.48498 * 109.47158 * 239.99978 * 10 8 6 14 14 N 1.46895 * 109.47557 * 120.00049 * 2 1 3 15 15 C 1.47849 * 110.99563 * 57.04153 * 14 2 1 16 16 C 1.54908 * 104.79534 * 213.63611 * 15 14 2 17 17 C 1.55145 * 101.65270 * 37.07335 * 16 15 14 18 18 H 1.08994 * 110.85482 * 82.79598 * 17 16 15 19 19 N 1.46904 * 110.70538 * 205.96639 * 17 16 15 20 20 C 1.47443 * 111.00188 * 296.20392 * 14 2 1 21 21 H 1.09004 * 109.47156 * 292.50945 * 1 2 3 22 22 H 1.08995 * 109.47069 * 52.51063 * 1 2 3 23 23 H 1.09002 * 109.46839 * 172.51123 * 1 2 3 24 24 H 1.09004 * 109.47115 * 54.99691 * 4 2 1 25 25 H 1.09001 * 109.47057 * 294.99863 * 4 2 1 26 26 H 1.09004 * 109.47211 * 60.00094 * 5 4 2 27 27 H 1.08998 * 109.47461 * 299.99443 * 5 4 2 28 28 H 0.97000 * 119.99696 * 180.02562 * 9 8 6 29 29 H 1.08996 * 110.37952 * 332.46649 * 15 14 2 30 30 H 1.09001 * 110.37487 * 94.81157 * 15 14 2 31 31 H 1.09000 * 110.98988 * 278.98259 * 16 15 14 32 32 H 1.08998 * 110.99336 * 155.15965 * 16 15 14 33 33 H 1.00905 * 110.99764 * 293.59632 * 19 17 16 34 34 H 1.00896 * 111.00267 * 57.54712 * 19 17 16 35 35 H 1.09001 * 109.88398 * 242.66469 * 20 14 2 36 36 H 1.09000 * 109.88914 * 3.68149 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4185 -1.3610 -2.8152 9 7 6.2690 -0.7756 -2.0006 10 14 6.0419 -2.2487 -4.3360 11 1 4.8924 -2.8251 -5.0787 12 1 6.7642 -1.2884 -5.2086 13 1 6.9647 -3.3388 -3.9294 14 7 2.0198 -0.6925 1.1994 15 6 1.4884 -2.0704 1.2696 16 6 1.3073 -2.3478 2.7828 17 6 0.8294 -0.9654 3.2999 18 1 -0.2427 -0.8430 3.1462 19 7 1.1718 -0.7946 4.7182 20 6 1.6229 0.0267 2.4238 21 1 -0.3634 0.3934 0.9494 22 1 -0.3633 0.6254 -0.8154 23 1 -0.3633 -1.0189 -0.1339 24 1 1.6053 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 3.9995 -1.0727 -0.4260 27 1 3.8532 0.4372 -1.3574 28 1 7.2196 -0.8014 -2.1917 29 1 0.5298 -2.1342 0.7547 30 1 2.1999 -2.7740 0.8374 31 1 2.2534 -2.6314 3.2438 32 1 0.5481 -3.1115 2.9517 33 1 0.6552 -1.4414 5.2953 34 1 2.1651 -0.8931 4.8648 35 1 2.5101 0.3661 2.9584 36 1 0.9964 0.8805 2.1658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:39 Heat of formation + Delta-G solvation = -8.198062 kcal Electronic energy + Delta-G solvation = -14667.996957 eV Core-core repulsion = 12379.328537 eV Total energy + Delta-G solvation = -2288.668420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44243 -35.44135 -33.08408 -31.58167 -29.72098 -28.49501 -26.82269 -24.93112 -22.31635 -21.02138 -20.45915 -18.85722 -16.65607 -16.05879 -15.64468 -15.15139 -14.44058 -13.83354 -13.75997 -13.23336 -12.81971 -12.54107 -12.25107 -12.09662 -11.71802 -11.63561 -11.26138 -11.00167 -10.98478 -10.75952 -10.62734 -10.41339 -10.12244 -9.61803 -9.18314 -8.86119 -8.73923 -8.22679 -7.73581 -5.87778 -3.89290 3.36395 3.43658 3.47645 4.26148 4.50280 4.54797 4.82850 4.91107 5.10418 5.33871 5.47524 5.52468 5.54500 5.58086 5.70018 5.78567 5.87928 6.11931 6.15228 6.19285 6.31584 6.38485 6.44226 6.67760 6.89978 7.03234 7.29690 7.32326 7.47403 7.61239 7.86211 8.08215 8.23098 8.57887 9.20073 9.73459 11.23277 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.006732 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.622055 B = 4157.980197 C = 4363.878934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.078 0.922 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.508 5.508 15 C 0.042 3.958 16 C -0.166 4.166 17 C 0.071 3.929 18 H 0.082 0.918 19 N -0.841 5.841 20 C 0.046 3.954 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.010 0.990 28 H 0.257 0.743 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.338 0.662 34 H 0.344 0.656 35 H 0.077 0.923 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 -1.164 9.823 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.034 4.034 3 H 0.096 0.904 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.231 5.231 15 C -0.086 4.086 16 C -0.206 4.206 17 C -0.042 4.042 18 H 0.100 0.900 19 N -0.369 5.369 20 C -0.082 4.082 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.981 -0.385 9.725 14.673 hybrid contribution -0.101 -1.452 -0.916 1.720 sum -11.082 -1.837 8.809 14.276 Atomic orbital electron populations 1.22548 0.98920 1.01693 1.01296 1.22043 0.91019 0.98755 0.91558 0.90422 1.21690 1.00804 0.98208 0.93196 1.19008 0.88093 0.96755 0.96973 1.21381 0.91860 1.33982 1.08460 0.93081 1.25003 0.97146 0.95791 0.96501 1.69996 1.02128 1.44404 1.36855 0.86629 0.78817 0.79577 0.83500 1.19896 1.21137 1.21140 1.63794 1.56849 1.01407 1.01084 1.23004 0.99177 0.91722 0.94671 1.23534 1.01345 0.98034 0.97652 1.22728 0.99449 0.93875 0.88120 0.89996 1.58819 1.12296 1.59794 1.05997 1.22821 0.98587 0.95908 0.90885 0.93241 0.92317 0.92578 0.93340 0.93484 0.95080 0.97205 0.93279 0.93123 0.89915 0.90858 0.91502 0.84966 0.84298 0.90496 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 8.52 37.16 0.32 -2.32 16 2 C 0.07 1.31 2.18 -67.71 -0.15 1.16 16 3 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 4 C -0.10 -2.13 4.54 -26.73 -0.12 -2.25 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 10 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 N -0.51 -8.65 4.63 -223.29 -1.03 -9.69 16 15 C 0.04 0.64 5.18 -2.30 -0.01 0.63 16 16 C -0.17 -2.02 6.74 -24.59 -0.17 -2.19 16 17 C 0.07 0.84 4.10 -65.89 -0.27 0.57 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 19 N -0.84 -8.69 9.33 -3.12 -0.03 -8.72 16 20 C 0.05 0.67 5.97 -2.84 -0.02 0.65 16 21 H 0.05 0.64 6.40 -51.93 -0.33 0.31 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.78 6.22 -51.93 -0.32 0.45 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.98 7.08 -51.93 -0.37 0.61 16 26 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.05 0.74 5.47 -51.93 -0.28 0.45 16 30 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 31 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.34 2.84 9.08 -39.29 -0.36 2.48 16 34 H 0.34 3.45 8.85 -39.29 -0.35 3.10 16 35 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 36 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 LS Contribution 280.95 15.07 4.23 4.23 Total: -1.00 -30.93 280.95 -8.15 -39.08 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.07 Total: 1.86 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.96 Total: -16.96 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.33 Total: -45.35 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.93 -8.15 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.878 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds