Wall clock time and date at job start Sun Mar 29 2020 21:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46836 * 2 1 4 4 C 1.53002 * 109.47095 * 240.00460 * 2 1 3 5 5 C 1.53000 * 109.46894 * 174.99656 * 4 2 1 6 6 C 1.50701 * 109.46970 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00223 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00248 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99764 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00434 * 179.72573 * 8 6 5 11 11 H 1.48500 * 109.46845 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47547 * 119.99554 * 10 8 6 13 13 H 1.48498 * 109.47158 * 239.99978 * 10 8 6 14 14 N 1.46895 * 109.47557 * 120.00049 * 2 1 3 15 15 C 1.47849 * 110.99563 * 57.04153 * 14 2 1 16 16 C 1.54908 * 104.79534 * 213.63611 * 15 14 2 17 17 C 1.55145 * 101.65270 * 37.07335 * 16 15 14 18 18 H 1.08994 * 110.85482 * 82.79598 * 17 16 15 19 19 N 1.46904 * 110.70538 * 205.96639 * 17 16 15 20 20 C 1.47443 * 111.00188 * 296.20392 * 14 2 1 21 21 H 1.09004 * 109.47156 * 292.50945 * 1 2 3 22 22 H 1.08995 * 109.47069 * 52.51063 * 1 2 3 23 23 H 1.09002 * 109.46839 * 172.51123 * 1 2 3 24 24 H 1.09004 * 109.47115 * 54.99691 * 4 2 1 25 25 H 1.09001 * 109.47057 * 294.99863 * 4 2 1 26 26 H 1.09004 * 109.47211 * 60.00094 * 5 4 2 27 27 H 1.08998 * 109.47461 * 299.99443 * 5 4 2 28 28 H 0.97000 * 119.99696 * 180.02562 * 9 8 6 29 29 H 1.08996 * 110.37952 * 332.46649 * 15 14 2 30 30 H 1.09001 * 110.37487 * 94.81157 * 15 14 2 31 31 H 1.09000 * 110.98988 * 278.98259 * 16 15 14 32 32 H 1.08998 * 110.99336 * 155.15965 * 16 15 14 33 33 H 1.00905 * 110.99764 * 293.59632 * 19 17 16 34 34 H 1.00896 * 111.00267 * 57.54712 * 19 17 16 35 35 H 1.09001 * 109.88398 * 242.66469 * 20 14 2 36 36 H 1.09000 * 109.88914 * 3.68149 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4185 -1.3610 -2.8152 9 7 6.2690 -0.7756 -2.0006 10 14 6.0419 -2.2487 -4.3360 11 1 4.8924 -2.8251 -5.0787 12 1 6.7642 -1.2884 -5.2086 13 1 6.9647 -3.3388 -3.9294 14 7 2.0198 -0.6925 1.1994 15 6 1.4884 -2.0704 1.2696 16 6 1.3073 -2.3478 2.7828 17 6 0.8294 -0.9654 3.2999 18 1 -0.2427 -0.8430 3.1462 19 7 1.1718 -0.7946 4.7182 20 6 1.6229 0.0267 2.4238 21 1 -0.3634 0.3934 0.9494 22 1 -0.3633 0.6254 -0.8154 23 1 -0.3633 -1.0189 -0.1339 24 1 1.6053 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 3.9995 -1.0727 -0.4260 27 1 3.8532 0.4372 -1.3574 28 1 7.2196 -0.8014 -2.1917 29 1 0.5298 -2.1342 0.7547 30 1 2.1999 -2.7740 0.8374 31 1 2.2534 -2.6314 3.2438 32 1 0.5481 -3.1115 2.9517 33 1 0.6552 -1.4414 5.2953 34 1 2.1651 -0.8931 4.8648 35 1 2.5101 0.3661 2.9584 36 1 0.9964 0.8805 2.1658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:39 Heat of formation + Delta-G solvation = -30.875000 kcal Electronic energy + Delta-G solvation = -14668.980303 eV Core-core repulsion = 12379.328537 eV Total energy + Delta-G solvation = -2289.651766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65369 -36.78478 -35.05248 -33.02852 -31.28464 -29.81411 -27.95952 -26.83797 -23.73873 -22.73756 -21.57969 -20.27440 -18.40939 -17.59870 -16.90546 -16.52837 -16.18633 -15.13443 -14.91216 -14.68425 -14.38411 -14.06315 -13.66553 -13.36636 -13.17650 -13.09669 -12.85782 -12.74346 -12.36679 -12.21712 -12.07253 -11.87686 -11.63699 -11.45895 -11.25751 -10.90709 -10.50987 -9.60354 -9.00336 -8.15086 -6.26207 1.39147 1.39815 1.52981 2.42669 3.09386 3.17291 3.52700 3.76017 3.88936 4.04768 4.12867 4.28378 4.37951 4.45275 4.53669 4.68419 4.72770 4.86765 4.93235 4.94836 5.02434 5.06974 5.13097 5.25923 5.33033 5.45061 5.57765 5.86573 5.99313 6.13500 6.26948 6.31516 6.33362 6.60653 6.93820 7.42316 8.96696 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.006732 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.622055 B = 4157.980197 C = 4363.878934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 H 0.062 0.938 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.539 5.539 15 C 0.040 3.960 16 C -0.155 4.155 17 C 0.085 3.915 18 H 0.095 0.905 19 N -0.841 5.841 20 C 0.046 3.954 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.001 0.999 27 H -0.023 1.023 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.352 0.648 34 H 0.345 0.655 35 H 0.063 0.937 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -1.952 9.867 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.263 5.263 15 C -0.088 4.088 16 C -0.195 4.195 17 C -0.028 4.028 18 H 0.113 0.887 19 N -0.371 5.371 20 C -0.082 4.082 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.019 0.981 27 H -0.004 1.004 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.618 -1.178 9.785 16.011 hybrid contribution 0.455 -1.179 -0.898 1.551 sum -12.163 -2.357 8.886 15.247 Atomic orbital electron populations 1.22397 0.95594 1.02502 1.02682 1.21833 0.93548 0.97266 0.90292 0.91948 1.21494 0.96712 0.98968 0.95536 1.18820 0.92009 0.93984 0.95030 1.21820 0.92535 1.34323 1.09320 0.92588 1.25981 0.97394 0.96506 1.00057 1.70141 1.02603 1.45702 1.39019 0.85432 0.78408 0.78289 0.79096 1.18596 1.20358 1.20435 1.63633 1.58337 1.02524 1.01828 1.22977 0.98610 0.90175 0.97020 1.23487 1.01856 0.99089 0.95043 1.22572 0.99496 0.92364 0.88399 0.88687 1.58785 1.12701 1.60341 1.05252 1.22800 0.98563 0.96588 0.90218 0.91462 0.91435 0.91870 0.92965 0.93278 0.98100 1.00427 0.92988 0.91938 0.92991 0.91573 0.89029 0.83349 0.84158 0.91878 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 8.52 71.98 0.61 -3.92 16 2 C 0.08 2.78 2.18 44.92 0.10 2.87 16 3 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.09 -3.82 4.54 30.59 0.14 -3.68 16 5 C 0.04 2.15 4.86 29.85 0.15 2.30 16 6 C -0.54 -32.18 9.11 25.60 0.23 -31.95 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.93 -59.26 13.29 21.45 0.28 -58.98 16 10 Si 0.96 45.71 29.54 68.60 2.03 47.73 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 N -0.54 -18.47 4.63 -860.37 -3.98 -22.46 16 15 C 0.04 1.20 5.18 86.77 0.45 1.65 16 16 C -0.15 -3.49 6.74 31.98 0.22 -3.28 16 17 C 0.08 1.81 4.10 46.10 0.19 2.00 16 18 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 19 N -0.84 -15.48 9.33 -163.79 -1.53 -17.01 16 20 C 0.05 1.30 5.97 86.65 0.52 1.81 16 21 H 0.07 1.54 6.40 -2.38 -0.02 1.52 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.58 6.22 -2.39 -0.01 1.56 16 24 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 2.05 7.08 -2.39 -0.02 2.04 16 26 H 0.00 0.03 7.75 -2.39 -0.02 0.02 16 27 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.06 1.71 5.47 -2.39 -0.01 1.69 16 30 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.07 1.59 8.11 -2.39 -0.02 1.57 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.35 4.91 9.08 -89.69 -0.81 4.09 16 34 H 0.35 6.40 8.85 -89.70 -0.79 5.61 16 35 H 0.06 1.92 7.92 -2.39 -0.02 1.90 16 36 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 Total: -1.00 -67.73 280.95 -0.69 -68.41 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.55 Total: 14.15 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.06 Total: -31.85 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -5.23 Total: -98.45 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.73 -0.69 -68.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.539 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds