Wall clock time and date at job start Sun Mar 29 2020 21:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52994 * 109.47404 * 175.00005 * 4 2 1 6 6 C 1.50698 * 109.47502 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99844 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00426 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00342 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47472 * 120.00127 * 10 8 6 13 13 H 1.48502 * 109.47317 * 240.00326 * 10 8 6 14 14 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 15 15 C 1.46903 * 110.99908 * 274.99684 * 14 2 1 16 16 C 1.53933 * 113.73502 * 251.73054 * 15 14 2 17 17 N 1.47963 * 86.17946 * 221.92000 * 16 15 14 18 18 C 1.46902 * 110.99915 * 137.58088 * 17 16 15 19 19 C 1.47955 * 90.76531 * 24.68790 * 17 16 15 20 20 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 24 24 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 25 25 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 26 26 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 27 27 H 0.97002 * 119.99862 * 180.02562 * 9 8 6 28 28 H 1.00894 * 111.00396 * 38.94794 * 14 2 1 29 29 H 1.09004 * 112.93774 * 23.43184 * 15 14 2 30 30 H 1.09009 * 113.75757 * 336.23489 * 16 15 14 31 31 H 1.09000 * 113.76607 * 107.60199 * 16 15 14 32 32 H 1.08994 * 109.47596 * 320.64105 * 18 17 16 33 33 H 1.09000 * 109.47165 * 80.63755 * 18 17 16 34 34 H 1.08994 * 109.47085 * 200.63506 * 18 17 16 35 35 H 1.08996 * 113.75906 * 220.99578 * 19 17 16 36 36 H 1.09005 * 113.76101 * 89.62698 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0671 -1.3243 -2.5438 7 1 3.3686 -1.8048 -3.2130 8 6 5.4184 -1.3615 -2.8151 9 7 6.2690 -0.7770 -2.0000 10 14 6.0410 -2.2422 -4.3402 11 1 4.8910 -2.8126 -5.0867 12 1 6.7646 -1.2783 -5.2078 13 1 6.9625 -3.3355 -3.9391 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 3.5162 0.6029 2.7582 17 7 3.0545 0.4352 4.1539 18 6 4.0584 -0.2734 4.9590 19 6 1.9847 -0.4855 3.7102 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.7516 -1.7715 -1.2056 24 1 1.6053 -0.2617 -2.1370 25 1 3.8532 0.4369 -1.3574 26 1 3.9994 -1.0729 -0.4259 27 1 7.2197 -0.8028 -2.1910 28 1 1.4495 -1.4979 1.4100 29 1 1.4120 1.0761 2.2467 30 1 4.2682 -0.1252 2.4539 31 1 3.7884 1.6278 2.5059 32 1 4.5066 -1.0686 4.3633 33 1 4.8331 0.4266 5.2720 34 1 3.5806 -0.7038 5.8390 35 1 1.0330 -0.3303 4.2184 36 1 2.2886 -1.5320 3.6843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:59 Heat of formation + Delta-G solvation = -1.962950 kcal Electronic energy + Delta-G solvation = -14383.060578 eV Core-core repulsion = 12094.662532 eV Total energy + Delta-G solvation = -2288.398046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89611 -37.86790 -35.16533 -32.85690 -30.94925 -29.07036 -27.12331 -26.92268 -24.13743 -23.05144 -21.42046 -20.59446 -18.35609 -17.40783 -16.75633 -16.48784 -16.15329 -15.44637 -14.82922 -14.75558 -14.36309 -14.01917 -13.72644 -13.62820 -13.28429 -13.11305 -12.86796 -12.64370 -12.39304 -12.30390 -11.94804 -11.79702 -11.52208 -11.45479 -11.19885 -10.91622 -10.48490 -9.88009 -9.17430 -8.13393 -6.23651 1.39966 1.40199 1.53414 2.43856 2.94057 3.18916 3.31982 3.55924 4.05437 4.13783 4.16438 4.32300 4.35952 4.50082 4.53114 4.59811 4.68961 4.79985 4.85392 4.92060 4.96327 5.05566 5.08720 5.18120 5.31115 5.31993 5.49302 5.60403 5.90601 6.02999 6.04003 6.29560 6.35630 6.63808 6.96617 7.44487 8.97894 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031002 B = 0.007192 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.951034 B = 3892.317247 C = 4608.565095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.057 0.943 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.541 4.541 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.679 5.679 15 C 0.063 3.937 16 C 0.006 3.994 17 N -0.493 5.493 18 C -0.009 4.009 19 C 0.008 3.992 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.049 0.951 25 H -0.025 1.025 26 H 0.004 0.996 27 H 0.260 0.740 28 H 0.347 0.653 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 0.417 10.447 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.075 0.925 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.205 1.205 14 N -0.312 5.312 15 C -0.048 4.048 16 C -0.124 4.124 17 N -0.215 5.215 18 C -0.158 4.158 19 C -0.122 4.122 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.067 0.933 25 H -0.007 1.007 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.167 0.833 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.700 1.088 10.723 14.500 hybrid contribution 0.357 -0.896 -1.005 1.393 sum -9.342 0.192 9.718 13.482 Atomic orbital electron populations 1.22390 0.95160 1.02585 1.02480 1.21562 0.93447 0.96781 0.90161 0.92460 1.21460 0.96496 0.99127 0.95583 1.18815 0.92243 0.93737 0.94976 1.21855 0.92476 1.34199 1.09432 0.92666 1.25953 0.97448 0.96552 0.99981 1.70132 1.02491 1.45734 1.38954 0.85467 0.78399 0.78284 0.79284 1.18637 1.20488 1.20500 1.60527 1.58074 1.09522 1.03053 1.23374 0.96141 0.95994 0.89257 1.24086 0.97883 1.01371 0.89063 1.68403 1.08847 1.34988 1.09285 1.22863 0.96335 0.97860 0.98749 1.24227 0.97754 0.96236 0.93934 0.91758 0.91789 0.91821 0.93302 0.93278 1.00653 0.97798 0.93113 0.83266 0.89749 0.92469 0.90652 0.95310 0.91047 0.89758 0.87528 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 9.15 71.98 0.66 -3.39 16 2 C 0.09 2.96 2.44 44.92 0.11 3.07 16 3 H 0.06 2.04 7.84 -2.39 -0.02 2.03 16 4 C -0.09 -3.67 4.83 30.59 0.15 -3.52 16 5 C 0.04 2.15 4.86 29.85 0.15 2.29 16 6 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 7 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.93 -58.54 13.29 21.45 0.28 -58.26 16 10 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 N -0.68 -21.27 5.77 -473.35 -2.73 -24.00 16 15 C 0.06 1.73 4.02 46.48 0.19 1.92 16 16 C 0.01 0.18 7.77 86.40 0.67 0.85 16 17 N -0.49 -13.01 6.56 -934.61 -6.13 -19.14 16 18 C -0.01 -0.21 9.65 127.69 1.23 1.02 16 19 C 0.01 0.17 7.56 86.41 0.65 0.83 16 20 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 21 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 25 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 26 H 0.00 0.21 7.75 -2.38 -0.02 0.19 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.35 9.39 8.29 -89.70 -0.74 8.65 16 29 H 0.08 2.20 7.50 -2.39 -0.02 2.19 16 30 H 0.06 2.12 7.62 -2.38 -0.02 2.10 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.03 0.72 7.62 -2.39 -0.02 0.71 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.75 7.92 -2.38 -0.02 1.73 16 Total: -1.00 -66.40 292.93 -1.77 -68.16 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.28 Total: 13.90 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.50 Total: -28.23 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -8.57 Total: -101.39 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.40 -1.77 -68.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.200 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds