Wall clock time and date at job start Sun Mar 29 2020 21:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46725 * 60.00093 * 10 8 6 12 12 H 1.48505 * 109.46988 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47116 * 300.00069 * 10 8 6 14 14 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 15 15 C 1.46897 * 111.00060 * 84.99377 * 14 2 1 16 16 C 1.53778 * 113.61564 * 252.49886 * 15 14 2 17 17 C 1.53789 * 87.07974 * 220.02090 * 16 15 14 18 18 N 1.46896 * 113.61250 * 270.88184 * 17 16 15 19 19 C 1.53776 * 87.08182 * 25.43383 * 17 16 15 20 20 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 21 21 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 22 22 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 24 24 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 25 25 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 26 26 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 27 27 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 28 28 H 1.00897 * 110.99884 * 321.04390 * 14 2 1 29 29 H 1.08998 * 112.85122 * 23.80995 * 15 14 2 30 30 H 1.09001 * 113.61511 * 334.56909 * 16 15 14 31 31 H 1.09002 * 113.61630 * 105.47653 * 16 15 14 32 32 H 1.08998 * 113.61304 * 139.98595 * 17 16 15 33 33 H 1.00900 * 111.00416 * 277.49653 * 18 17 16 34 34 H 1.00897 * 111.00201 * 41.45668 * 18 17 16 35 35 H 1.09004 * 113.61484 * 220.01885 * 19 17 16 36 36 H 1.08997 * 113.61496 * 89.11252 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0673 -1.3243 2.5437 7 1 3.3689 -1.8047 3.2127 8 6 5.4187 -1.3613 2.8148 9 7 6.2692 -0.7767 1.9998 10 14 6.0414 -2.2421 4.3399 11 1 5.6479 -3.6728 4.2805 12 1 7.5215 -2.1384 4.4017 13 1 5.4499 -1.6158 5.5494 14 7 2.0197 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3469 16 6 0.9909 -0.0333 -3.3995 17 6 2.0661 0.2360 -4.4655 18 7 2.1744 1.6502 -4.8478 19 6 3.1030 -0.1998 -3.4169 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7716 1.2054 24 1 1.6054 -0.2618 2.1369 25 1 3.9995 -1.0727 0.4258 26 1 3.8532 0.4370 1.3572 27 1 7.2199 -0.8031 2.1903 28 1 1.4496 -1.4978 -1.4102 29 1 2.1682 1.2681 -2.0504 30 1 0.6196 -1.0581 -3.4031 31 1 0.1914 0.7076 -3.3888 32 1 2.0063 -0.4322 -5.3245 33 1 1.4775 1.8933 -5.5359 34 1 2.1082 2.2496 -4.0389 35 1 4.0087 0.4068 -3.4200 36 1 3.3090 -1.2701 -3.4251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:54 Heat of formation + Delta-G solvation = 1.476812 kcal Electronic energy + Delta-G solvation = -14310.419327 eV Core-core repulsion = 12022.170441 eV Total energy + Delta-G solvation = -2288.248886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49202 -36.25187 -33.06401 -31.72251 -29.75246 -28.34766 -25.56962 -24.98773 -23.02926 -21.31412 -20.00234 -18.78112 -16.67332 -16.07580 -15.40348 -14.83431 -14.49299 -14.25390 -13.56726 -13.13390 -12.98975 -12.62249 -12.34433 -12.28497 -12.03723 -11.54655 -11.18712 -11.08336 -10.82042 -10.68949 -10.41872 -10.39785 -9.85459 -9.59058 -9.16167 -8.86773 -8.80045 -8.19660 -7.80380 -5.84870 -3.86244 3.40689 3.44825 3.47317 4.38057 4.49284 4.56806 4.60130 4.82337 5.11029 5.12568 5.39781 5.49132 5.50242 5.62934 5.70357 5.77567 5.82360 6.08520 6.13687 6.25703 6.31647 6.34009 6.44622 6.71597 6.91759 7.05274 7.30859 7.35134 7.58893 7.85483 7.88221 8.11780 8.27540 8.61137 9.22762 9.76126 11.26157 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041108 B = 0.006301 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.962314 B = 4442.739084 C = 4931.958945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.658 5.658 15 C 0.074 3.926 16 C -0.206 4.206 17 C 0.068 3.932 18 N -0.829 5.829 19 C -0.123 4.123 20 H 0.057 0.943 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.006 0.994 27 H 0.258 0.742 28 H 0.336 0.664 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.339 0.661 34 H 0.342 0.658 35 H 0.074 0.926 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 2.721 -10.980 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.287 5.287 15 C -0.038 4.038 16 C -0.248 4.248 17 C -0.045 4.045 18 N -0.358 5.358 19 C -0.162 4.162 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.848 2.645 -11.083 15.061 hybrid contribution -1.583 -0.308 1.083 1.943 sum -11.431 2.337 -10.000 15.367 Atomic orbital electron populations 1.22568 0.98702 1.01407 1.01086 1.21812 0.90836 0.98199 0.91785 0.91172 1.21638 1.00665 0.98321 0.93089 1.18989 0.88258 0.96456 0.97028 1.21318 0.91838 1.34108 1.08519 0.93205 1.24997 0.97127 0.95788 0.96487 1.69968 1.02192 1.44344 1.36941 0.86747 0.77583 0.80288 0.83852 1.20386 1.21388 1.20442 1.60417 1.57046 1.08478 1.02742 1.23029 0.94780 0.96768 0.89182 1.24564 0.97980 1.01985 1.00236 1.22397 0.96147 0.89844 0.96088 1.58657 1.56606 1.03082 1.17422 1.23190 0.97679 1.02121 0.93195 0.92432 0.93858 0.92904 0.93553 0.93629 0.94885 0.97542 0.93187 0.84457 0.89263 0.89853 0.92413 0.89628 0.84843 0.84482 0.90681 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.16 37.16 0.34 -2.09 16 2 C 0.08 1.41 2.58 -67.71 -0.17 1.24 16 3 H 0.07 1.25 7.46 -51.93 -0.39 0.86 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.86 13.29 55.43 0.74 -27.13 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 N -0.66 -10.64 5.82 -98.89 -0.58 -11.22 16 15 C 0.07 1.01 3.66 -66.90 -0.24 0.76 16 16 C -0.21 -2.23 7.41 -25.92 -0.19 -2.42 16 17 C 0.07 0.74 5.18 -66.90 -0.35 0.40 16 18 N -0.83 -8.40 9.64 -3.98 -0.04 -8.44 16 19 C -0.12 -1.67 7.68 -25.92 -0.20 -1.87 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 22 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.34 4.96 7.93 -39.29 -0.31 4.65 16 29 H 0.09 1.26 7.05 -51.93 -0.37 0.89 16 30 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.34 2.73 9.08 -39.29 -0.36 2.37 16 34 H 0.34 3.38 8.15 -39.29 -0.32 3.06 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -31.16 292.16 -8.30 -39.47 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.32 Total: 5.16 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -1.49 Total: -19.53 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.12 Total: -46.78 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.16 -8.30 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.942 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds