Wall clock time and date at job start Sun Mar 29 2020 21:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46725 * 60.00093 * 10 8 6 12 12 H 1.48505 * 109.46988 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47116 * 300.00069 * 10 8 6 14 14 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 15 15 C 1.46897 * 111.00060 * 84.99377 * 14 2 1 16 16 C 1.53778 * 113.61564 * 252.49886 * 15 14 2 17 17 C 1.53789 * 87.07974 * 220.02090 * 16 15 14 18 18 N 1.46896 * 113.61250 * 270.88184 * 17 16 15 19 19 C 1.53776 * 87.08182 * 25.43383 * 17 16 15 20 20 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 21 21 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 22 22 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 24 24 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 25 25 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 26 26 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 27 27 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 28 28 H 1.00897 * 110.99884 * 321.04390 * 14 2 1 29 29 H 1.08998 * 112.85122 * 23.80995 * 15 14 2 30 30 H 1.09001 * 113.61511 * 334.56909 * 16 15 14 31 31 H 1.09002 * 113.61630 * 105.47653 * 16 15 14 32 32 H 1.08998 * 113.61304 * 139.98595 * 17 16 15 33 33 H 1.00900 * 111.00416 * 277.49653 * 18 17 16 34 34 H 1.00897 * 111.00201 * 41.45668 * 18 17 16 35 35 H 1.09004 * 113.61484 * 220.01885 * 19 17 16 36 36 H 1.08997 * 113.61496 * 89.11252 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0673 -1.3243 2.5437 7 1 3.3689 -1.8047 3.2127 8 6 5.4187 -1.3613 2.8148 9 7 6.2692 -0.7767 1.9998 10 14 6.0414 -2.2421 4.3399 11 1 5.6479 -3.6728 4.2805 12 1 7.5215 -2.1384 4.4017 13 1 5.4499 -1.6158 5.5494 14 7 2.0197 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3469 16 6 0.9909 -0.0333 -3.3995 17 6 2.0661 0.2360 -4.4655 18 7 2.1744 1.6502 -4.8478 19 6 3.1030 -0.1998 -3.4169 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7716 1.2054 24 1 1.6054 -0.2618 2.1369 25 1 3.9995 -1.0727 0.4258 26 1 3.8532 0.4370 1.3572 27 1 7.2199 -0.8031 2.1903 28 1 1.4496 -1.4978 -1.4102 29 1 2.1682 1.2681 -2.0504 30 1 0.6196 -1.0581 -3.4031 31 1 0.1914 0.7076 -3.3888 32 1 2.0063 -0.4322 -5.3245 33 1 1.4775 1.8933 -5.5359 34 1 2.1082 2.2496 -4.0389 35 1 4.0087 0.4068 -3.4200 36 1 3.3090 -1.2701 -3.4251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:54 Heat of formation + Delta-G solvation = -21.153743 kcal Electronic energy + Delta-G solvation = -14311.400662 eV Core-core repulsion = 12022.170441 eV Total energy + Delta-G solvation = -2289.230221 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53593 -37.63717 -35.12611 -33.03125 -31.40210 -29.57105 -27.03413 -26.46658 -24.15955 -23.09369 -21.54245 -19.86075 -18.35430 -17.68177 -16.60630 -16.40083 -15.95895 -15.46317 -14.83970 -14.45568 -14.30618 -14.15548 -13.81955 -13.50564 -13.27536 -13.10035 -12.89062 -12.80195 -12.37229 -12.22420 -11.92285 -11.68211 -11.51710 -11.26411 -11.04552 -10.84548 -10.48157 -9.63811 -9.02463 -8.13246 -6.24397 1.39695 1.43491 1.51233 2.44048 3.18675 3.32642 3.52933 3.65610 3.85293 4.01060 4.08446 4.20754 4.37260 4.43548 4.66291 4.77290 4.85420 4.87260 4.98144 5.03432 5.07832 5.14104 5.18100 5.29666 5.33083 5.47167 5.58970 5.89195 6.03150 6.21712 6.34205 6.38364 6.60653 6.69042 6.95656 7.43879 8.97968 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041108 B = 0.006301 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.962314 B = 4442.739084 C = 4931.958945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 H 0.056 0.944 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.681 5.681 15 C 0.067 3.933 16 C -0.183 4.183 17 C 0.082 3.918 18 N -0.836 5.836 19 C -0.134 4.134 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.003 0.997 26 H -0.026 1.026 27 H 0.261 0.739 28 H 0.344 0.656 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.354 0.646 34 H 0.343 0.657 35 H 0.051 0.949 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 2.212 -11.010 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.311 5.311 15 C -0.043 4.043 16 C -0.225 4.225 17 C -0.031 4.031 18 N -0.367 5.367 19 C -0.173 4.173 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.021 0.979 26 H -0.008 1.008 27 H 0.070 0.930 28 H 0.164 0.836 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.069 0.931 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.552 2.141 -11.128 16.183 hybrid contribution -0.995 -0.124 1.065 1.463 sum -12.547 2.017 -10.063 16.210 Atomic orbital electron populations 1.22399 0.95302 1.02397 1.02315 1.21567 0.93374 0.96611 0.90336 0.92616 1.21475 0.96473 0.99100 0.95699 1.18818 0.92288 0.93690 0.95054 1.21796 0.92544 1.34465 1.09464 0.92600 1.25981 0.97382 0.96496 1.00068 1.70123 1.02580 1.45659 1.39103 0.85548 0.76996 0.79257 0.79498 1.19217 1.20875 1.19174 1.60296 1.57912 1.09493 1.03406 1.23056 0.96595 0.95847 0.88852 1.24380 0.97339 1.02888 0.97881 1.22267 0.94457 0.90482 0.95917 1.58602 1.57476 1.02659 1.17922 1.23241 0.97556 1.01338 0.95203 0.91947 0.91875 0.91995 0.93414 0.93324 0.97868 1.00766 0.93020 0.83567 0.90051 0.88970 0.90919 0.88338 0.83157 0.84356 0.93059 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 9.16 71.98 0.66 -3.44 16 2 C 0.09 3.05 2.58 44.91 0.12 3.17 16 3 H 0.06 2.02 7.46 -2.39 -0.02 2.00 16 4 C -0.09 -3.80 4.83 30.59 0.15 -3.65 16 5 C 0.04 2.15 4.86 29.85 0.15 2.30 16 6 C -0.54 -32.52 9.11 25.60 0.23 -32.28 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 8 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 9 N -0.93 -59.58 13.29 21.45 0.28 -59.29 16 10 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 N -0.68 -21.96 5.82 -466.77 -2.72 -24.68 16 15 C 0.07 1.81 3.66 45.44 0.17 1.98 16 16 C -0.18 -3.52 7.41 31.12 0.23 -3.29 16 17 C 0.08 1.65 5.18 45.44 0.24 1.89 16 18 N -0.84 -15.62 9.64 -166.50 -1.60 -17.22 16 19 C -0.13 -3.70 7.68 31.12 0.24 -3.46 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 22 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 26 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 27 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.34 9.81 7.93 -89.70 -0.71 9.10 16 29 H 0.08 2.31 7.05 -2.39 -0.02 2.29 16 30 H 0.09 1.66 7.82 -2.39 -0.02 1.64 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.35 4.86 9.08 -89.69 -0.81 4.04 16 34 H 0.34 6.37 8.15 -89.70 -0.73 5.64 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -68.20 292.16 -0.57 -68.77 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -1.19 Total: 20.95 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 2.63 Total: -36.46 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -4.04 Total: -101.20 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -68.20 -0.57 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.620 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds