Wall clock time and date at job start Sun Mar 29 2020 21:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 C 1.53788 * 113.61082 * 252.49384 * 15 14 2 17 17 C 1.53776 * 87.08040 * 220.01818 * 16 15 14 18 18 N 1.46900 * 113.61876 * 270.88280 * 17 16 15 19 19 C 1.53776 * 87.08095 * 25.43556 * 17 16 15 20 20 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 21 21 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 23 23 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 24 24 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 26 26 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 27 27 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 28 28 H 1.00895 * 111.00265 * 38.95653 * 14 2 1 29 29 H 1.08997 * 112.85632 * 23.79839 * 15 14 2 30 30 H 1.08994 * 113.61537 * 334.57058 * 16 15 14 31 31 H 1.09007 * 113.61149 * 105.47279 * 16 15 14 32 32 H 1.09008 * 113.61233 * 139.98471 * 17 16 15 33 33 H 1.00894 * 110.99988 * 277.50245 * 18 17 16 34 34 H 1.00899 * 110.99611 * 41.45077 * 18 17 16 35 35 H 1.09007 * 113.61257 * 220.01365 * 19 17 16 36 36 H 1.09001 * 113.61671 * 89.11945 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 4.8915 -2.8122 -5.0865 12 1 6.7638 -1.2764 -5.2086 13 1 6.9639 -3.3332 -3.9394 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 6 3.5151 0.6157 2.7439 17 6 3.0597 0.4914 4.2074 18 7 2.5105 1.7364 4.7606 19 6 1.9844 -0.4876 3.7073 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3635 0.5137 0.8900 23 1 1.6055 -0.2617 -2.1369 24 1 1.7517 -1.7714 -1.2056 25 1 3.9995 -1.0726 -0.4258 26 1 3.8532 0.4372 -1.3572 27 1 7.2197 -0.8005 -2.1917 28 1 1.4496 -1.4979 1.4100 29 1 1.4066 1.0722 2.2483 30 1 4.2654 -0.1206 2.4560 31 1 3.7850 1.6316 2.4554 32 1 3.8023 0.0293 4.8580 33 1 3.2482 2.3483 5.0760 34 1 1.9184 2.2006 4.0883 35 1 1.0184 -0.3624 4.1968 36 1 2.3162 -1.5256 3.6830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:57 Heat of formation + Delta-G solvation = 0.524603 kcal Electronic energy + Delta-G solvation = -14358.294763 eV Core-core repulsion = 12070.004586 eV Total energy + Delta-G solvation = -2288.290177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36212 -36.27161 -33.07434 -31.68519 -29.80132 -28.30505 -25.50792 -25.04344 -22.96318 -21.26522 -19.81783 -18.75683 -16.66838 -16.09820 -15.25873 -14.91356 -14.54393 -14.29916 -13.78074 -13.08388 -12.80598 -12.39235 -12.34250 -12.29026 -11.98936 -11.53087 -11.16532 -11.11725 -10.85088 -10.48819 -10.38133 -10.30722 -9.92249 -9.60350 -9.18929 -8.86624 -8.72586 -8.22284 -7.83573 -5.87579 -3.88426 3.36703 3.43906 3.48188 4.41141 4.55022 4.60409 4.70319 4.85885 5.09237 5.22305 5.41904 5.48034 5.53385 5.65016 5.73002 5.88806 5.99155 6.10070 6.19382 6.27552 6.29264 6.41169 6.51276 6.71791 6.91521 7.10035 7.34126 7.35377 7.61369 7.85590 7.87467 8.09903 8.25165 8.59427 9.20917 9.74130 11.23526 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036225 B = 0.006741 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.768297 B = 4152.903365 C = 4712.852680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.069 0.931 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.658 5.658 15 C 0.062 3.938 16 C -0.159 4.159 17 C 0.065 3.935 18 N -0.832 5.832 19 C -0.137 4.137 20 H 0.057 0.943 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.006 0.994 27 H 0.257 0.743 28 H 0.335 0.665 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.342 0.658 34 H 0.339 0.661 35 H 0.067 0.933 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.905 3.196 10.422 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.087 0.913 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.288 5.288 15 C -0.048 4.048 16 C -0.199 4.199 17 C -0.047 4.047 18 N -0.360 5.360 19 C -0.176 4.176 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.416 2.836 10.825 14.001 hybrid contribution 0.018 0.143 -1.538 1.545 sum -8.398 2.979 9.287 12.870 Atomic orbital electron populations 1.22553 0.98687 1.01508 1.01132 1.21776 0.90793 0.98236 0.91869 0.91285 1.21622 1.00617 0.98337 0.93066 1.18987 0.88307 0.96392 0.96995 1.21403 0.91859 1.33846 1.08451 0.93079 1.24999 0.97145 0.95809 0.96520 1.69991 1.02072 1.44508 1.36938 0.86628 0.78815 0.79531 0.83544 1.19881 1.21196 1.21124 1.60654 1.57073 1.08545 1.02561 1.22969 0.96902 0.95389 0.89553 1.23860 0.98168 1.01984 0.95912 1.22380 0.96625 0.91610 0.94124 1.58731 1.25084 1.08188 1.44044 1.23314 0.99307 0.99260 0.95704 0.92373 0.92785 0.93838 0.93653 0.93516 0.94930 0.97608 0.93351 0.84618 0.91975 0.88359 0.92379 0.89369 0.84525 0.84811 0.91450 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.15 37.16 0.34 -2.15 16 2 C 0.08 1.42 2.44 -67.72 -0.17 1.26 16 3 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 4 C -0.10 -2.08 4.83 -26.74 -0.13 -2.21 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 10 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 14 N -0.66 -10.69 5.76 -98.89 -0.57 -11.26 16 15 C 0.06 0.87 3.49 -66.90 -0.23 0.63 16 16 C -0.16 -2.29 7.60 -25.92 -0.20 -2.49 16 17 C 0.07 0.77 5.18 -66.91 -0.35 0.43 16 18 N -0.83 -8.70 9.64 -3.98 -0.04 -8.74 16 19 C -0.14 -1.65 7.45 -25.92 -0.19 -1.85 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 22 H 0.04 0.54 7.74 -51.93 -0.40 0.14 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.34 4.97 8.29 -39.29 -0.33 4.65 16 29 H 0.06 0.83 7.06 -51.93 -0.37 0.47 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.34 3.07 9.08 -39.29 -0.36 2.72 16 34 H 0.34 3.39 8.15 -39.29 -0.32 3.07 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -30.86 292.47 -8.30 -39.17 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.35 Total: 5.72 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.47 Total: -19.60 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.13 Total: -46.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.86 -8.30 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.690 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds