Wall clock time and date at job start Sun Mar 29 2020 21:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 C 1.53788 * 113.61082 * 252.49384 * 15 14 2 17 17 C 1.53776 * 87.08040 * 220.01818 * 16 15 14 18 18 N 1.46900 * 113.61876 * 270.88280 * 17 16 15 19 19 C 1.53776 * 87.08095 * 25.43556 * 17 16 15 20 20 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 21 21 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 23 23 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 24 24 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 26 26 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 27 27 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 28 28 H 1.00895 * 111.00265 * 38.95653 * 14 2 1 29 29 H 1.08997 * 112.85632 * 23.79839 * 15 14 2 30 30 H 1.08994 * 113.61537 * 334.57058 * 16 15 14 31 31 H 1.09007 * 113.61149 * 105.47279 * 16 15 14 32 32 H 1.09008 * 113.61233 * 139.98471 * 17 16 15 33 33 H 1.00894 * 110.99988 * 277.50245 * 18 17 16 34 34 H 1.00899 * 110.99611 * 41.45077 * 18 17 16 35 35 H 1.09007 * 113.61257 * 220.01365 * 19 17 16 36 36 H 1.09001 * 113.61671 * 89.11945 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 4.8915 -2.8122 -5.0865 12 1 6.7638 -1.2764 -5.2086 13 1 6.9639 -3.3332 -3.9394 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 6 3.5151 0.6157 2.7439 17 6 3.0597 0.4914 4.2074 18 7 2.5105 1.7364 4.7606 19 6 1.9844 -0.4876 3.7073 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3635 0.5137 0.8900 23 1 1.6055 -0.2617 -2.1369 24 1 1.7517 -1.7714 -1.2056 25 1 3.9995 -1.0726 -0.4258 26 1 3.8532 0.4372 -1.3572 27 1 7.2197 -0.8005 -2.1917 28 1 1.4496 -1.4979 1.4100 29 1 1.4066 1.0722 2.2483 30 1 4.2654 -0.1206 2.4560 31 1 3.7850 1.6316 2.4554 32 1 3.8023 0.0293 4.8580 33 1 3.2482 2.3483 5.0760 34 1 1.9184 2.2006 4.0883 35 1 1.0184 -0.3624 4.1968 36 1 2.3162 -1.5256 3.6830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:57 Heat of formation + Delta-G solvation = -21.763427 kcal Electronic energy + Delta-G solvation = -14359.261245 eV Core-core repulsion = 12070.004586 eV Total energy + Delta-G solvation = -2289.256659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46631 -37.67906 -35.14476 -33.01540 -31.45088 -29.56228 -27.02406 -26.56524 -24.16183 -23.05291 -21.38324 -19.86403 -18.36905 -17.74560 -16.54875 -16.33598 -15.97287 -15.79331 -14.96416 -14.55442 -14.26391 -14.09727 -13.78754 -13.42153 -13.15214 -13.08692 -12.95962 -12.86434 -12.32436 -12.28527 -11.84507 -11.56645 -11.43010 -11.25665 -11.17040 -10.86505 -10.50027 -9.67049 -9.09399 -8.14759 -6.25357 1.39057 1.39668 1.52895 2.42936 3.17446 3.33563 3.54369 3.64015 3.83421 3.99373 4.07415 4.19011 4.33819 4.45051 4.60365 4.76688 4.85862 4.96591 4.98165 5.01798 5.07478 5.09622 5.22824 5.28639 5.33294 5.47757 5.58505 5.88505 6.02222 6.18080 6.33628 6.38470 6.56067 6.67564 6.94732 7.42901 8.96710 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036225 B = 0.006741 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.768297 B = 4152.903365 C = 4712.852680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.053 0.947 4 C -0.089 4.089 5 C 0.040 3.960 6 C -0.542 4.542 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.679 5.679 15 C 0.063 3.937 16 C -0.169 4.169 17 C 0.080 3.920 18 N -0.827 5.827 19 C -0.124 4.124 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.004 0.996 26 H -0.027 1.027 27 H 0.261 0.739 28 H 0.344 0.656 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.351 0.649 34 H 0.344 0.656 35 H 0.081 0.919 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 2.810 10.531 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.003 3.997 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.311 5.311 15 C -0.047 4.047 16 C -0.210 4.210 17 C -0.033 4.033 18 N -0.357 5.357 19 C -0.163 4.163 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.022 0.978 26 H -0.009 1.009 27 H 0.069 0.931 28 H 0.163 0.837 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.812 2.456 10.944 14.903 hybrid contribution 0.497 0.297 -1.555 1.660 sum -9.316 2.754 9.389 13.510 Atomic orbital electron populations 1.22395 0.95324 1.02526 1.02373 1.21535 0.93299 0.96612 0.90502 0.92822 1.21461 0.96548 0.99102 0.95593 1.18803 0.92208 0.93606 0.95054 1.21852 0.92536 1.34275 1.09397 0.92664 1.25969 0.97399 0.96512 1.00051 1.70134 1.02525 1.45701 1.39021 0.85444 0.78400 0.78288 0.79164 1.18639 1.20430 1.20401 1.60524 1.57840 1.09538 1.03174 1.23020 0.96368 0.95647 0.89630 1.23869 0.97986 1.00432 0.98726 1.22271 0.96466 0.92342 0.92259 1.58747 1.25297 1.07998 1.43641 1.23220 0.99960 0.98986 0.94130 0.91848 0.91859 0.91876 0.93391 0.93359 0.97782 1.00866 0.93069 0.83652 0.90848 0.91742 0.93220 0.88878 0.83490 0.84315 0.89990 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 9.15 71.98 0.66 -3.56 16 2 C 0.09 3.06 2.44 44.91 0.11 3.17 16 3 H 0.05 1.97 7.84 -2.39 -0.02 1.95 16 4 C -0.09 -3.78 4.83 30.59 0.15 -3.63 16 5 C 0.04 2.24 4.86 29.85 0.15 2.38 16 6 C -0.54 -32.28 9.11 25.60 0.23 -32.04 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 8 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 9 N -0.93 -58.98 13.29 21.45 0.28 -58.69 16 10 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 N -0.68 -21.95 5.76 -466.78 -2.69 -24.64 16 15 C 0.06 1.71 3.49 45.44 0.16 1.87 16 16 C -0.17 -5.02 7.60 31.12 0.24 -4.78 16 17 C 0.08 1.81 5.18 45.44 0.24 2.04 16 18 N -0.83 -15.75 9.64 -166.50 -1.60 -17.35 16 19 C -0.12 -2.79 7.45 31.12 0.23 -2.56 16 20 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 22 H 0.06 1.37 7.74 -2.39 -0.02 1.35 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.00 0.23 7.75 -2.39 -0.02 0.21 16 26 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.34 9.85 8.29 -89.70 -0.74 9.11 16 29 H 0.07 1.84 7.06 -2.39 -0.02 1.82 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.35 5.72 9.08 -89.70 -0.81 4.90 16 34 H 0.34 6.18 8.15 -89.69 -0.73 5.45 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -67.22 292.47 -0.59 -67.81 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -1.23 Total: 21.85 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 2.62 Total: -36.78 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.01 Total: -100.68 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -67.22 -0.59 -67.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.043 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds