Wall clock time and date at job start Sun Mar 29 2020 21:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47212 * 2 1 4 4 C 1.53002 * 109.47171 * 239.99899 * 2 1 3 5 5 C 1.52998 * 109.47075 * 174.99822 * 4 2 1 6 6 C 1.50701 * 109.47250 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99723 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00045 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99704 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00017 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47107 * 89.99669 * 10 8 6 12 12 H 1.48501 * 109.47078 * 209.99842 * 10 8 6 13 13 H 1.48504 * 109.47188 * 329.99584 * 10 8 6 14 14 N 1.46905 * 109.47077 * 119.99797 * 2 1 3 15 15 C 1.46898 * 110.99838 * 271.42459 * 14 2 1 16 16 C 1.52998 * 115.54828 * 159.56942 * 15 14 2 17 17 N 1.46900 * 109.46935 * 326.20424 * 16 15 14 18 18 C 1.52997 * 117.49819 * 13.85955 * 15 14 2 19 19 C 1.53003 * 117.49764 * 305.23315 * 15 14 2 20 20 H 1.08994 * 109.47428 * 294.56869 * 1 2 3 21 21 H 1.09000 * 109.47207 * 174.56934 * 1 2 3 22 22 H 1.09001 * 109.47110 * 54.57300 * 1 2 3 23 23 H 1.09002 * 109.47249 * 294.99840 * 4 2 1 24 24 H 1.09003 * 109.47219 * 55.00221 * 4 2 1 25 25 H 1.09000 * 109.47561 * 300.00353 * 5 4 2 26 26 H 1.09003 * 109.46771 * 60.00124 * 5 4 2 27 27 H 0.96999 * 119.99699 * 180.02562 * 9 8 6 28 28 H 1.00898 * 110.99763 * 147.47191 * 14 2 1 29 29 H 1.08998 * 109.47418 * 86.20584 * 16 15 14 30 30 H 1.08996 * 109.47122 * 206.20765 * 16 15 14 31 31 H 1.00903 * 111.00175 * 183.97398 * 17 16 15 32 32 H 1.00902 * 111.00271 * 307.91693 * 17 16 15 33 33 H 1.08993 * 117.50520 * 359.97438 * 18 15 14 34 34 H 1.09004 * 117.49727 * 145.02680 * 18 15 14 35 35 H 1.09000 * 117.49787 * 214.97858 * 19 15 14 36 36 H 1.08996 * 117.50163 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0673 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4185 -1.3604 -2.8155 9 7 5.8570 -1.9813 -3.8887 10 14 6.6265 -0.5288 -1.6586 11 1 7.0621 -1.4958 -0.6191 12 1 7.8083 -0.0632 -2.4279 13 1 5.9694 0.6337 -1.0089 14 7 2.0197 -0.6925 1.1995 15 6 2.1630 0.2411 2.3246 16 6 2.1866 -0.3989 3.7141 17 7 1.3118 -1.5790 3.7246 18 6 1.5044 1.6155 2.1904 19 6 3.0265 1.4849 2.1049 20 1 -0.3634 0.4273 0.9346 21 1 -0.3633 -1.0230 -0.0973 22 1 -0.3633 0.5957 -0.8374 23 1 1.7517 -1.7716 -1.2056 24 1 1.6054 -0.2618 -2.1370 25 1 3.8532 0.4370 -1.3573 26 1 3.9994 -1.0728 -0.4259 27 1 6.8076 -2.0071 -4.0797 28 1 2.8890 -1.1692 1.0122 29 1 3.2054 -0.6997 3.9584 30 1 1.8337 0.3215 4.4520 31 1 1.2594 -1.9821 4.6481 32 1 0.3924 -1.3507 3.3771 33 1 0.9652 1.8273 1.2672 34 1 1.0877 2.0641 3.0923 35 1 3.6110 1.8475 2.9505 36 1 3.4879 1.6107 1.1255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:49 Heat of formation + Delta-G solvation = 18.875793 kcal Electronic energy + Delta-G solvation = -14701.859587 eV Core-core repulsion = 12414.365177 eV Total energy + Delta-G solvation = -2287.494410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29656 -35.40091 -33.32392 -32.60879 -30.17411 -29.08134 -25.35010 -25.12731 -22.32608 -21.23951 -19.96440 -18.90716 -16.81133 -16.34822 -15.71720 -14.98148 -14.33229 -14.06360 -13.96455 -13.40984 -12.99664 -12.73293 -12.44788 -12.12191 -11.97537 -11.41324 -11.30765 -11.26748 -10.94132 -10.70104 -10.45853 -10.06065 -9.84186 -9.65657 -9.41713 -9.15768 -8.52627 -8.49517 -7.85983 -6.02870 -4.00469 3.30994 3.38134 3.40668 3.81224 4.33117 4.45817 4.52985 4.89179 4.95460 5.18696 5.30709 5.45287 5.47531 5.61853 5.66132 5.72608 5.81658 5.91486 6.10272 6.15242 6.18741 6.29831 6.43878 6.48436 6.76744 6.88906 7.18081 7.30071 7.38108 7.58745 7.61251 7.80782 7.87420 8.56177 9.02875 9.59799 11.10743 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.008508 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.658622 B = 3290.252455 C = 3604.626857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.045 0.955 4 C -0.107 4.107 5 C -0.013 4.013 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.880 3.120 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.629 5.629 15 C 0.059 3.941 16 C 0.112 3.888 17 N -0.829 5.829 18 C -0.187 4.187 19 C -0.219 4.219 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.262 0.738 28 H 0.355 0.645 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.331 0.669 32 H 0.345 0.655 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 6.222 14.766 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.062 0.938 4 C -0.145 4.145 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.707 3.293 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.193 1.193 14 N -0.262 5.262 15 C -0.035 4.035 16 C -0.019 4.019 17 N -0.358 5.358 18 C -0.224 4.224 19 C -0.259 4.259 20 H 0.068 0.932 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.178 0.822 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.699 5.612 14.319 17.669 hybrid contribution 1.067 1.573 0.866 2.088 sum -7.632 7.184 15.185 18.451 Atomic orbital electron populations 1.21852 0.95460 1.01905 1.00243 1.21799 0.94982 0.96671 0.90404 0.93758 1.21683 0.98004 1.00165 0.94670 1.19597 0.91976 0.96363 0.97142 1.21135 0.92916 1.34134 1.07399 0.90996 1.25039 0.98415 0.94952 0.95085 1.69916 1.14557 1.43456 1.26333 0.86783 0.80819 0.80454 0.81229 1.20211 1.21460 1.19257 1.60226 1.35850 1.26445 1.03661 1.21734 1.02511 0.85607 0.93627 1.21144 0.97973 0.90850 0.91966 1.58401 1.17304 1.30973 1.29108 1.23498 0.95771 0.99568 1.03541 1.23594 0.93556 1.05257 1.03520 0.93242 0.92238 0.93256 0.91812 0.92195 0.97143 0.97259 0.92783 0.82199 0.91087 0.95715 0.85681 0.84217 0.87640 0.89210 0.89040 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.83 37.16 0.33 -1.61 16 2 C 0.07 1.17 2.04 -67.71 -0.14 1.03 16 3 H 0.04 0.75 5.02 -51.93 -0.26 0.49 16 4 C -0.11 -2.15 4.72 -26.73 -0.13 -2.28 16 5 C -0.01 -0.32 3.88 -27.88 -0.11 -0.43 16 6 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 7 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 10 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 14 N -0.63 -10.15 6.01 -93.04 -0.56 -10.71 16 15 C 0.06 0.81 2.87 -131.60 -0.38 0.43 16 16 C 0.11 1.33 7.03 -3.82 -0.03 1.30 16 17 N -0.83 -9.56 9.20 -10.37 -0.10 -9.65 16 18 C -0.19 -2.32 8.46 -26.73 -0.23 -2.55 16 19 C -0.22 -3.01 9.59 -26.72 -0.26 -3.27 16 20 H 0.05 0.64 6.63 -51.93 -0.34 0.29 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 16 26 H 0.01 0.22 5.87 -51.93 -0.31 -0.08 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.35 6.50 6.54 -39.29 -0.26 6.24 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.02 0.25 7.90 -51.93 -0.41 -0.16 16 31 H 0.33 3.04 9.08 -39.29 -0.36 2.68 16 32 H 0.34 3.91 8.94 -39.29 -0.35 3.56 16 33 H 0.11 1.37 4.93 -51.93 -0.26 1.11 16 34 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.56 7.40 -51.93 -0.38 1.18 16 LS Contribution 282.64 15.07 4.26 4.26 Total: -1.00 -30.43 282.64 -7.49 -37.93 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.84 Total: 9.08 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.36 Total: -20.82 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.12 Total: -47.86 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.43 -7.49 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.803 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds